BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_D08_G15ZT.seq
(500 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI3391747G gi3391747g LENGTH:776bp ; DIRECTION:0 ; CLONE: n/a ; ... 36 0.015
CL270CT321CN766 cl270ct321cn766 COVERAGE:0.99; CRAWID: 1; TOTAL_... 34 0.061
MGNS007AG03F.B mgns007aG03f.b LENGTH:488bp ; DIRECTION:0 ; CLONE... 30 0.95
MGMY004DB02F.B mgmy004dB02f.b LENGTH:292bp ; DIRECTION:0 ; CLONE... 30 0.95
MGCS002DC02F.B mgcs002dC02f.b LENGTH:158bp ; DIRECTION:0 ; CLONE... 30 0.95
MGAP007BE07F.B mgap007bE07f.b LENGTH:506bp ; DIRECTION:0 ; CLONE... 30 0.95
CL575CT649CN1392 cl575ct649cn1392 COVERAGE:0.99; CRAWID: 1; TOTA... 30 0.95
MGCS010DF05F.B mgcs010dF05f.b LENGTH:321bp ; DIRECTION:0 ; CLONE... 28 3.8
GI14180259 gi14180259 LENGTH:743bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.8
CL978CT1079CN1860 cl978ct1079cn1860 COVERAGE:0.99; CRAWID: 1; TO... 28 3.8
CL654CT736CN1503 cl654ct736cn1503 COVERAGE:0.96; CRAWID: 1; TOTA... 28 3.8
CL464CT536CN1202 cl464ct536cn1202 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.8
CL221CT261CN659 cl221ct261cn659 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 3.8
>GI3391747G gi3391747g LENGTH:776bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 776
Score = 36.2 bits (18), Expect = 0.015
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 145 catgtcgacattatggac 162
||||||||||||||||||
Sbjct: 328 catgtcgacattatggac 345
>CL270CT321CN766 cl270ct321cn766 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:36; ESTS:gi14180984,gi25373
Length = 1538
Score = 34.2 bits (17), Expect = 0.061
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 307 ttcaagaaggctggctgcaac 327
||||||||||||||| |||||
Sbjct: 1256 ttcaagaaggctggcagcaac 1276
>MGNS007AG03F.B mgns007aG03f.b LENGTH:488bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 488
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 caagacaatcattgc 65
|||||||||||||||
Sbjct: 280 caagacaatcattgc 266
>MGMY004DB02F.B mgmy004dB02f.b LENGTH:292bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 292
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tacctcgaaaatggc 47
|||||||||||||||
Sbjct: 217 tacctcgaaaatggc 231
>MGCS002DC02F.B mgcs002dC02f.b LENGTH:158bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 158
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 tttgattgtcatatg 273
|||||||||||||||
Sbjct: 88 tttgattgtcatatg 74
>MGAP007BE07F.B mgap007bE07f.b LENGTH:506bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 506
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 tccccaacatcacct 187
|||||||||||||||
Sbjct: 123 tccccaacatcacct 137
>CL575CT649CN1392 cl575ct649cn1392 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391742g,mgcs010
Length = 792
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 435 ccaaggcttgttggc 449
|||||||||||||||
Sbjct: 366 ccaaggcttgttggc 380
>MGCS010DF05F.B mgcs010dF05f.b LENGTH:321bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 321
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 attatggacggtca 167
||||||||||||||
Sbjct: 115 attatggacggtca 128
>GI14180259 gi14180259 LENGTH:743bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 743
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 485 tgctatgggagatc 498
||||||||||||||
Sbjct: 301 tgctatgggagatc 314
>CL978CT1079CN1860 cl978ct1079cn1860 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgcm001bF06f.b,mg
Length = 545
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 ttgctcagcttggc 102
||||||||||||||
Sbjct: 437 ttgctcagcttggc 424
>CL654CT736CN1503 cl654ct736cn1503 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537250g,mgmy003
Length = 1235
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 280 gcagagcccaagaa 293
||||||||||||||
Sbjct: 104 gcagagcccaagaa 91
>CL464CT536CN1202 cl464ct536cn1202 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:122; ESTS:gi3392367g,mgap0
Length = 870
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 358 tccagcgctgccga 371
||||||||||||||
Sbjct: 505 tccagcgctgccga 492
>CL221CT261CN659 cl221ct261cn659 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:9; ESTS:gi14181138,mgcm008d
Length = 846
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 aatggctcccaaga 55
||||||||||||||
Sbjct: 126 aatggctcccaaga 139
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 701
Number of Sequences: 4717
Number of extensions: 701
Number of successful extensions: 196
Number of sequences better than 10.0: 13
length of query: 500
length of database: 2,543,711
effective HSP length: 15
effective length of query: 485
effective length of database: 2,472,956
effective search space: 1199383660
effective search space used: 1199383660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)