BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_F09_K17ZT.seq
         (502 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CL1369CT1472CN2266 cl1369ct1472cn2266 COVERAGE:0.99; CRAWID: 1; ...    32  0.24
CL1226CT1329CN2119 cl1226ct1329cn2119 COVERAGE:0.99; CRAWID: 1; ...    30  0.96
MGMY004DF07F.B mgmy004dF07f.b LENGTH:368bp ; DIRECTION:0 ; CLONE...    28  3.8
MGCS008DD12F.B mgcs008dD12f.b LENGTH:310bp ; DIRECTION:0 ; CLONE...    28  3.8
GI3392118G gi3392118g LENGTH:864bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  3.8
CL821CT915CN1689 cl821ct915cn1689 COVERAGE:0.97; CRAWID: 1; TOTA...    28  3.8
CL812CT903CN1677 cl812ct903cn1677 COVERAGE:0.98; CRAWID: 1; TOTA...    28  3.8
CL181CT219CN572 cl181ct219cn572 COVERAGE:0.95; CRAWID: 1; TOTAL_...    28  3.8

>CL1369CT1472CN2266 cl1369ct1472cn2266 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgns012aC12f.b,m
          Length = 639

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 298 gtgacttgcaaccaga 313
           ||||||||||||||||
Sbjct: 263 gtgacttgcaaccaga 278



>CL1226CT1329CN2119 cl1226ct1329cn2119 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgcm009dG09f.b,m
          Length = 497

 Score = 30.2 bits (15), Expect = 0.96
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 82  tggtggccaactcgg 96
           |||||||||||||||
Sbjct: 420 tggtggccaactcgg 434



>MGMY004DF07F.B mgmy004dF07f.b LENGTH:368bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 368

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 306 caaccagaggaggg 319
           ||||||||||||||
Sbjct: 269 caaccagaggaggg 256



>MGCS008DD12F.B mgcs008dD12f.b LENGTH:310bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 310

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 139 gccccctgactgca 152
           ||||||||||||||
Sbjct: 83  gccccctgactgca 96



>GI3392118G gi3392118g LENGTH:864bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 864

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 79  ggttggtggccaac 92
           ||||||||||||||
Sbjct: 596 ggttggtggccaac 583



>CL821CT915CN1689 cl821ct915cn1689 COVERAGE:0.97; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgmy002cA03f.b,mgc
          Length = 546

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 46  ctgttgccaacagt 59
           ||||||||||||||
Sbjct: 276 ctgttgccaacagt 263



>CL812CT903CN1677 cl812ct903cn1677 COVERAGE:0.98; CRAWID: 1;
          TOTAL_ESTS:8; ESTS:mgmy002bB05f.b,mgm
          Length = 790

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 25 ggtcgcaacaagcc 38
          ||||||||||||||
Sbjct: 40 ggtcgcaacaagcc 53



>CL181CT219CN572 cl181ct219cn572 COVERAGE:0.95; CRAWID: 1;
            TOTAL_ESTS:4; ESTS:gi14181231,gi141805
          Length = 1585

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 313  aggagggcactgtt 326
            ||||||||||||||
Sbjct: 1133 aggagggcactgtt 1146



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 546
Number of Sequences: 4717
Number of extensions: 546
Number of successful extensions: 159
Number of sequences better than 10.0: 8
length of query: 502
length of database: 2,543,711
effective HSP length: 15
effective length of query: 487
effective length of database: 2,472,956
effective search space: 1204329572
effective search space used: 1204329572
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)