BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_G02_M03ZT.seq
(398 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI3392179G gi3392179g LENGTH:766bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 0.75
GI3392101G gi3392101g LENGTH:817bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.0
GI14180764 gi14180764 LENGTH:642bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.0
GI14180208 gi14180208 LENGTH:789bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.0
CL762CT851CN1625 cl762ct851cn1625 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.0
CL602CT679CN1429 cl602ct679cn1429 COVERAGE:0.98; CRAWID: 1; TOTA... 28 3.0
CL1287CT1390CN2181 cl1287ct1390cn2181 COVERAGE:0.99; CRAWID: 1; ... 28 3.0
>GI3392179G gi3392179g LENGTH:766bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 766
Score = 30.2 bits (15), Expect = 0.75
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 tgcgcagttcagctc 27
|||||||||||||||
Sbjct: 272 tgcgcagttcagctc 286
>GI3392101G gi3392101g LENGTH:817bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 817
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 atccagcccgtcaa 98
||||||||||||||
Sbjct: 438 atccagcccgtcaa 425
>GI14180764 gi14180764 LENGTH:642bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 642
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ttcagctcctttca 33
||||||||||||||
Sbjct: 190 ttcagctcctttca 203
>GI14180208 gi14180208 LENGTH:789bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 789
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 cgagtcggtcgaca 265
||||||||||||||
Sbjct: 282 cgagtcggtcgaca 269
>CL762CT851CN1625 cl762ct851cn1625 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgmy001cD04f.b,mgm
Length = 682
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 tccccgcatccagc 91
||||||||||||||
Sbjct: 538 tccccgcatccagc 551
>CL602CT679CN1429 cl602ct679cn1429 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391596g,mgcm001
Length = 1033
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 tcagcctcaaaagt 44
||||||||||||||
Sbjct: 151 tcagcctcaaaagt 138
>CL1287CT1390CN2181 cl1287ct1390cn2181 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns001dG11f.b,m
Length = 515
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 254 agtcggtcgacaat 267
||||||||||||||
Sbjct: 5 agtcggtcgacaat 18
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 488
Number of Sequences: 4717
Number of extensions: 488
Number of successful extensions: 126
Number of sequences better than 10.0: 7
length of query: 398
length of database: 2,543,711
effective HSP length: 15
effective length of query: 383
effective length of database: 2,472,956
effective search space: 947142148
effective search space used: 947142148
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)