BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_H02_O03ZT.seq
(461 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM012AB06F.B mgcm012aB06f.b LENGTH:349bp ; DIRECTION:0 ; CLONE... 32 0.22
MGMY004CC05F.B mgmy004cC05f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 30 0.88
MGCM002AE09F.B mgcm002aE09f.b LENGTH:379bp ; DIRECTION:0 ; CLONE... 28 3.5
MGAP007CB01F.B mgap007cB01f.b LENGTH:457bp ; DIRECTION:0 ; CLONE... 28 3.5
GI3392149G gi3392149g LENGTH:900bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
CL1216CT1319CN2109 cl1216ct1319cn2109 COVERAGE:0.99; CRAWID: 1; ... 28 3.5
>MGCM012AB06F.B mgcm012aB06f.b LENGTH:349bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 349
Score = 32.2 bits (16), Expect = 0.22
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 436 gcattgagaatgcggt 451
||||||||||||||||
Sbjct: 221 gcattgagaatgcggt 206
>MGMY004CC05F.B mgmy004cC05f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 30.2 bits (15), Expect = 0.88
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 cgttggctgcgcctt 57
|||||||||||||||
Sbjct: 11 cgttggctgcgcctt 25
>MGCM002AE09F.B mgcm002aE09f.b LENGTH:379bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 379
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 360 ccgatggtgacacc 373
||||||||||||||
Sbjct: 186 ccgatggtgacacc 173
>MGAP007CB01F.B mgap007cB01f.b LENGTH:457bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 457
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 tccgccgacgagaa 132
||||||||||||||
Sbjct: 354 tccgccgacgagaa 341
>GI3392149G gi3392149g LENGTH:900bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 900
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 322 ttgcttcttgttgt 335
||||||||||||||
Sbjct: 404 ttgcttcttgttgt 391
>CL1216CT1319CN2109 cl1216ct1319cn2109 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm009aA06f.b,m
Length = 546
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 tctgttgagttctt 201
||||||||||||||
Sbjct: 91 tctgttgagttctt 104
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 595
Number of Sequences: 4717
Number of extensions: 595
Number of successful extensions: 181
Number of sequences better than 10.0: 7
length of query: 461
length of database: 2,543,711
effective HSP length: 15
effective length of query: 446
effective length of database: 2,472,956
effective search space: 1102938376
effective search space used: 1102938376
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)