BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_H03_O05ZT.seq
(499 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL1096CT1199CN1986 cl1096ct1199cn1986 COVERAGE:0.99; CRAWID: 1; ... 36 0.015
GI2537299G gi2537299g LENGTH:583bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 0.95
CL672CT755CN1523 cl672ct755cn1523 COVERAGE:1.0; CRAWID: 1; TOTAL... 30 0.95
CL546CT620CN1350 cl546ct620cn1350 COVERAGE:0.99; CRAWID: 1; TOTA... 30 0.95
CL49CT72CN261 cl49ct72cn261 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:... 30 0.95
MGNS012AC04F.B mgns012aC04f.b LENGTH:417bp ; DIRECTION:0 ; CLONE... 28 3.8
MGNS009AB07F.B mgns009aB07f.b LENGTH:470bp ; DIRECTION:0 ; CLONE... 28 3.8
MGMY006AC11F.B mgmy006aC11f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 28 3.8
MGCS011CB09F.B mgcs011cB09f.b LENGTH:220bp ; DIRECTION:0 ; CLONE... 28 3.8
MGCS008CC08F.B mgcs008cC08f.b LENGTH:493bp ; DIRECTION:0 ; CLONE... 28 3.8
MGCS006CD01F.B mgcs006cD01f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 28 3.8
MGCM007BH11F.B mgcm007bH11f.b LENGTH:412bp ; DIRECTION:0 ; CLONE... 28 3.8
MGCM004DE11F.B mgcm004dE11f.b LENGTH:435bp ; DIRECTION:0 ; CLONE... 28 3.8
MGCM001DB06F.B mgcm001dB06f.b LENGTH:442bp ; DIRECTION:0 ; CLONE... 28 3.8
GI3392194G gi3392194g LENGTH:822bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.8
GI3391896G gi3391896g LENGTH:762bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.8
GI14181550 gi14181550 LENGTH:655bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.8
CL982CT1083CN1865 cl982ct1083cn1865 COVERAGE:0.99; CRAWID: 1; TO... 28 3.8
CL800CT891CN1665 cl800ct891cn1665 COVERAGE:0.97; CRAWID: 1; TOTA... 28 3.8
CL654CT736CN1503 cl654ct736cn1503 COVERAGE:0.96; CRAWID: 1; TOTA... 28 3.8
CL437CT507CN1148 cl437ct507cn1148 COVERAGE:0.96; CRAWID: 1; TOTA... 28 3.8
CL178CT215CN562 cl178ct215cn562 COVERAGE:1.0; CRAWID: 3; TOTAL_E... 28 3.8
CL177CT214CN557 cl177ct214cn557 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 3.8
CL1406CT1509CN2305 cl1406ct1509cn2305 COVERAGE:0.99; CRAWID: 1; ... 28 3.8
CL1347CT1450CN2242 cl1347ct1450cn2242 COVERAGE:0.99; CRAWID: 1; ... 28 3.8
>CL1096CT1199CN1986 cl1096ct1199cn1986 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm004aF10f.b,m
Length = 702
Score = 36.2 bits (18), Expect = 0.015
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 239 gcgaggccggtgaggtga 256
||||||||||||||||||
Sbjct: 30 gcgaggccggtgaggtga 13
>GI2537299G gi2537299g LENGTH:583bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 583
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 aaggacatcaacatc 222
|||||||||||||||
Sbjct: 8 aaggacatcaacatc 22
>CL672CT755CN1523 cl672ct755cn1523 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgap007bC03f.b,mgap
Length = 692
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 ggcgaggccggtgag 252
|||||||||||||||
Sbjct: 591 ggcgaggccggtgag 605
>CL546CT620CN1350 cl546ct620cn1350 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi3391907g,mgap008
Length = 897
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 326 tccccgagaagaagc 340
|||||||||||||||
Sbjct: 544 tccccgagaagaagc 558
>CL49CT72CN261 cl49ct72cn261 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi14180986,gi3391858g;
Length = 1303
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 gatggtgttacccgt 33
|||||||||||||||
Sbjct: 352 gatggtgttacccgt 338
>MGNS012AC04F.B mgns012aC04f.b LENGTH:417bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 417
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 gaggccggtgaggt 254
||||||||||||||
Sbjct: 390 gaggccggtgaggt 403
>MGNS009AB07F.B mgns009aB07f.b LENGTH:470bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 470
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 tctggaactgatcc 55
||||||||||||||
Sbjct: 143 tctggaactgatcc 130
>MGMY006AC11F.B mgmy006aC11f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 264 ggtcaagggctggc 277
||||||||||||||
Sbjct: 88 ggtcaagggctggc 75
>MGCS011CB09F.B mgcs011cB09f.b LENGTH:220bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 220
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 297 tcgcaccgagcacc 310
||||||||||||||
Sbjct: 168 tcgcaccgagcacc 181
>MGCS008CC08F.B mgcs008cC08f.b LENGTH:493bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 493
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgacaagctgatcc 16
||||||||||||||
Sbjct: 156 cgacaagctgatcc 143
>MGCS006CD01F.B mgcs006cD01f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 gctgatccttgatg 22
||||||||||||||
Sbjct: 36 gctgatccttgatg 23
>MGCM007BH11F.B mgcm007bH11f.b LENGTH:412bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 412
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 ctgcctacttcatc 177
||||||||||||||
Sbjct: 169 ctgcctacttcatc 182
>MGCM004DE11F.B mgcm004dE11f.b LENGTH:435bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 435
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ctttcgccgctggc 162
||||||||||||||
Sbjct: 399 ctttcgccgctggc 412
>MGCM001DB06F.B mgcm001dB06f.b LENGTH:442bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 442
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 tgaggtcatggagg 121
||||||||||||||
Sbjct: 438 tgaggtcatggagg 425
>GI3392194G gi3392194g LENGTH:822bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 822
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 aaaggacatcaaca 220
||||||||||||||
Sbjct: 385 aaaggacatcaaca 398
>GI3391896G gi3391896g LENGTH:762bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 762
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gagcgtcttggtga 71
||||||||||||||
Sbjct: 569 gagcgtcttggtga 556
>GI14181550 gi14181550 LENGTH:655bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 655
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 459 acagagatgcagat 472
||||||||||||||
Sbjct: 335 acagagatgcagat 348
>CL982CT1083CN1865 cl982ct1083cn1865 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001bG05f.b,mg
Length = 497
Score = 28.2 bits (14), Expect = 3.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 229 ggcgccgagggcgaggcc 246
||||||||||||| ||||
Sbjct: 402 ggcgccgagggcgcggcc 419
>CL800CT891CN1665 cl800ct891cn1665 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:31; ESTS:mgmy002aD10f.b,mg
Length = 1271
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 333 cgctggcactgcct 346
>CL654CT736CN1503 cl654ct736cn1503 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537250g,mgmy003
Length = 1235
Score = 28.2 bits (14), Expect = 3.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 7 aagctgatccttgatggt 24
|||||| |||||||||||
Sbjct: 447 aagctgctccttgatggt 430
>CL437CT507CN1148 cl437ct507cn1148 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180323,gi14180
Length = 1030
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 catgggcgccgagg 238
||||||||||||||
Sbjct: 347 catgggcgccgagg 360
>CL178CT215CN562 cl178ct215cn562 COVERAGE:1.0; CRAWID: 3;
TOTAL_ESTS:1; ESTS:gi3391545g; LENGTH:8
Length = 873
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 tttcgccgctggca 163
||||||||||||||
Sbjct: 229 tttcgccgctggca 242
>CL177CT214CN557 cl177ct214cn557 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:10; ESTS:gi14181247,gi14181
Length = 1742
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 tcagatccaccacc 202
||||||||||||||
Sbjct: 1088 tcagatccaccacc 1101
>CL1406CT1509CN2305 cl1406ct1509cn2305 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs003cC12f.b,m
Length = 650
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 257 ccagcaaggtcaag 270
||||||||||||||
Sbjct: 464 ccagcaaggtcaag 477
>CL1347CT1450CN2242 cl1347ct1450cn2242 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:15; ESTS:mgns008cH11f.b,
Length = 516
Score = 28.2 bits (14), Expect = 3.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 94 aagtacaccatctctgag 111
|||||||||||| |||||
Sbjct: 473 aagtacaccatcactgag 490
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 783
Number of Sequences: 4717
Number of extensions: 783
Number of successful extensions: 193
Number of sequences better than 10.0: 25
length of query: 499
length of database: 2,543,711
effective HSP length: 15
effective length of query: 484
effective length of database: 2,472,956
effective search space: 1196910704
effective search space used: 1196910704
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)