TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_H03_O05ZT.seq
(499 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006AH12F.B mgmy006aH12f.b LENGTH:425bp ; DIRECTION:0 ; CLONE... 116 6e-28
CL39CT45CN154 cl39ct45cn154 COVERAGE:0.98; CRAWID: 2; TOTAL_ESTS... 29 0.24
MGCM001BA08F.B mgcm001bA08f.b LENGTH:438bp ; DIRECTION:0 ; CLONE... 27 0.61
CL800CT891CN1665 cl800ct891cn1665 COVERAGE:0.97; CRAWID: 1; TOTA... 27 0.84
MGCS011BG09F.B mgcs011bG09f.b LENGTH:415bp ; DIRECTION:0 ; CLONE... 27 0.84
CL706CT790CN1561 cl706ct790cn1561 COVERAGE:0.99; CRAWID: 1; TOTA... 27 0.84
CL105CT138CN417 cl105ct138cn417 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 1.2
MGMY004DA10F.B mgmy004dA10f.b LENGTH:278bp ; DIRECTION:0 ; CLONE... 26 1.2
CL342CT401CN883 cl342ct401cn883 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 1.2
GI14181542 gi14181542 LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.2
CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.6
GI3392364G gi3392364g LENGTH:867bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.6
MGNS007BF07F.B mgns007bF07f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 26 1.6
MGCM001DH11F.B mgcm001dH11f.b LENGTH:153bp ; DIRECTION:0 ; CLONE... 26 1.6
GI3391896G gi3391896g LENGTH:762bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 2.2
CL1464CT1568CN2364 cl1464ct1568cn2364 COVERAGE:0.99; CRAWID: 1; ... 25 2.2
CL411CT477CN1074 cl411ct477cn1074 COVERAGE:1.0; CRAWID: 1; TOTAL... 25 2.2
CL662CT745CN1512 cl662ct745cn1512 COVERAGE:0.97; CRAWID: 1; TOTA... 25 3.0
CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1; TOTA... 25 3.0
CL833CT929CN1704 cl833ct929cn1704 COVERAGE:0.98; CRAWID: 1; TOTA... 25 3.0
CL198CT238CN617 cl198ct238cn617 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 25 3.0
MGNS010AH07F.B mgns010aH07f.b LENGTH:553bp ; DIRECTION:0 ; CLONE... 25 3.0
CL833CT928CN1703 cl833ct928cn1703 COVERAGE:1.0; CRAWID: 1; TOTAL... 25 3.0
MGMY005CA10F.B mgmy005cA10f.b LENGTH:354bp ; DIRECTION:0 ; CLONE... 25 3.0
CL854CT950CN1725 cl854ct950cn1725 COVERAGE:0.99; CRAWID: 1; TOTA... 25 3.0
CL459CT530CN1192 cl459ct530cn1192 COVERAGE:0.99; CRAWID: 1; TOTA... 25 3.0
CL925CT1024CN1804 cl925ct1024cn1804 COVERAGE:0.99; CRAWID: 1; TO... 25 3.0
MGCS001DC11F.B mgcs001dC11f.b LENGTH:370bp ; DIRECTION:0 ; CLONE... 25 3.0
CL665CT748CN1516 cl665ct748cn1516 COVERAGE:0.98; CRAWID: 1; TOTA... 25 3.0
MGMY002AD02F.B mgmy002aD02f.b LENGTH:307bp ; DIRECTION:0 ; CLONE... 25 3.0
CL325CT380CN857 cl325ct380cn857 COVERAGE:0.96; CRAWID: 1; TOTAL_... 24 4.1
CL295CT347CN805 cl295ct347cn805 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 4.1
GI14181370 gi14181370 LENGTH:715bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 4.1
GI2537247G gi2537247g LENGTH:1011bp ; DIRECTION:0 ; CLONE: n/a ;... 24 4.1
CL647CT728CN1494 cl647ct728cn1494 COVERAGE:0.99; CRAWID: 1; TOTA... 24 4.1
MGCM005BF04F.B mgcm005bF04f.b LENGTH:534bp ; DIRECTION:0 ; CLONE... 24 4.1
CL364CT427CN947 cl364ct427cn947 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 4.1
CL203CT243CN627 cl203ct243cn627 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 4.1
CL204CT244CN628 cl204ct244cn628 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 4.1
GI3392387G gi3392387g LENGTH:782bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.6
MGNS008CH10F.B mgns008cH10f.b LENGTH:402bp ; DIRECTION:0 ; CLONE... 24 5.6
MGCS008BH03F.B mgcs008bH03f.b LENGTH:303bp ; DIRECTION:0 ; CLONE... 24 5.6
GI14181184 gi14181184 LENGTH:687bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.6
CL24CT30CN111 cl24ct30cn111 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS... 24 5.6
CL888CT987CN1762 cl888ct987cn1762 COVERAGE:0.98; CRAWID: 1; TOTA... 24 5.6
MGCS010BC03F.B mgcs010bC03f.b LENGTH:525bp ; DIRECTION:0 ; CLONE... 24 5.6
MGNS001AD10F.B mgns001aD10f.b LENGTH:545bp ; DIRECTION:0 ; CLONE... 24 5.6
GI14181218 gi14181218 LENGTH:668bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.6
CL749CT837CN1610 cl749ct837cn1610 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.6
CL13CT18CN70 cl13ct18cn70 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 24 5.6
MGCM006DF10F.B mgcm006dF10f.b LENGTH:489bp ; DIRECTION:0 ; CLONE... 22 7.6
CL514CT588CN1299 cl514ct588cn1299 COVERAGE:1.0; CRAWID: 2; TOTAL... 24 7.8
MGAP007AE07F.B mgap007aE07f.b LENGTH:402bp ; DIRECTION:0 ; CLONE... 24 7.8
MGCS009BH03F.B mgcs009bH03f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 24 7.8
MGMY005CF07F.B mgmy005cF07f.b LENGTH:387bp ; DIRECTION:0 ; CLONE... 24 7.8
CL95CT128CN401 cl95ct128cn401 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 24 7.8
CL339CT398CN880 cl339ct398cn880 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.8
CL195CT235CN612 cl195ct235cn612 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.8
MGCM012BH03F.B mgcm012bH03f.b LENGTH:439bp ; DIRECTION:0 ; CLONE... 24 7.8
CL741CT827CN1600 cl741ct827cn1600 COVERAGE:1.0; CRAWID: 1; TOTAL... 24 7.8
>MGMY006AH12F.B mgmy006aH12f.b LENGTH:425bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 425
Score = 116 bits (249), Expect = 6e-28
Identities = 46/67 (68%), Positives = 56/67 (82%)
Frame = +1 / +3
Query: 1 DDKLILDGVTRRSCLELIRERLGDEYEITERKYTISEVMEADAEGRLLESFAAGTAYFIC 180
DD++IL G+TR S LEL R RLGDE ++ ER+YTI EV EA AEGR++ESFA+GTAYF+C
Sbjct: 225 DDRVILGGITRMSVLELARSRLGDEVDVVERRYTIDEVFEAYAEGRIVESFASGTAYFVC 404
Query: 181 PISQIHH 201
PIS IHH
Sbjct: 405 PISLIHH 425
Score = 61.5 bits (128), Expect = 3e-11
Identities = 30/67 (44%), Positives = 42/67 (61%)
Frame = -2 / -1
Query: 201 VVDLRNGADEVGSASGERLEQTTLSISLHDLRDGVLSLSNLILVTKTLTDQFQTAATGNT 22
VVD +GAD++ S+ +RL TL I L +L DGV +L ++ LV++ Q Q A TGNT
Sbjct: 425 VVDQGDGADKISSSRRKRLNDATLGIGLKNLIDGVAALDDVNLVSEPRPRQLQDAHTGNT 246
Query: 21 IKDQLVV 1
+D VV
Sbjct: 245 AEDDPVV 225
Score = 56.0 bits (116), Expect = 1e-09
Identities = 25/34 (73%), Positives = 26/34 (75%)
Frame = -3 / -2
Query: 200 WWI*EMGQMK*AVPAAKDSSRRPSASASMTSEMV 99
WWI EMGQ K*AVP A DS+ RPSA AS TS MV
Sbjct: 424 WWIKEMGQTK*AVPDANDSTMRPSA*ASKTSSMV 323
Score = 38.2 bits (77), Expect = 3e-04
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1 / -3
Query: 193 SEKWGR*SRQCQRRKTRADDXXXXXXXXQRWCTFAQ*SHTRHQDAHGSVPDSCDG*HHQG 14
S +WGR ++Q Q + T+ D RWC+ A+ R + + P G*+ +G
Sbjct: 417 SRRWGRQNKQFQTQTTQRCDPRHRPQKPHRWCSGARRRQPRLRASTSPAPGRSYG*YRRG 238
Query: 13 SACR 2
CR
Sbjct: 237 *PCR 226
Score = 36.3 bits (73), Expect(2) = 0.001
Identities = 17/35 (48%), Positives = 19/35 (53%)
Frame = +3 / +2
Query: 90 AKVHHL*GHGG*C*GSSARVFRRWHCLLHLPHFSD 194
A +HH *G G C GS V W+CL LPH D
Sbjct: 314 APLHHR*GF*GLCRGSHR*VVCVWNCLFCLPHLLD 418
Score = 19.4 bits (36), Expect(2) = 0.001
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2 / +1
Query: 2 TTS*SLMVLPVAAVWN 49
TT S VLPV A W+
Sbjct: 226 TTGSSSAVLPV*ASWS 273
>CL39CT45CN154 cl39ct45cn154 COVERAGE:0.98; CRAWID: 2; TOTAL_ESTS:18;
ESTS:gi14181521,mgmy001bG
Length = 1535
Score = 28.6 bits (56), Expect = 0.24
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2 / +3
Query: 219 VDVLSAVVDLRNGADEVGSASGERLEQTTLSISLHDLRDGVLSLSNLILVTKTLTDQFQT 40
+D ++AVV+L + + A G+RL LH DGV +S + + D QT
Sbjct: 1239 LDHMTAVVNLPHINQLLAPADGDRLGVRLALERLHSSLDGVHGVSRSRNACREVLDTGQT 1418
Query: 39 A 37
A
Sbjct: 1419 A 1421
>MGCM001BA08F.B mgcm001bA08f.b LENGTH:438bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 438
Score = 27.2 bits (53), Expect = 0.61
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3 / +3
Query: 374 LLVHLFYRTIYCFFSGMTTPHGCSVRP 294
L V LF+R+ C F + HG S P
Sbjct: 51 LFVSLFFRSSLCLFLSRLSCHGASSPP 131
>CL800CT891CN1665 cl800ct891cn1665 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:31; ESTS:mgmy002aD10f.b,mg
Length = 1271
Score = 26.7 bits (52), Expect = 0.84
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 144 RVFRRWHCLLHLPH 185
R++ RWHCL H H
Sbjct: 321 RLWHRWHCLGHSVH 362
>MGCS011BG09F.B mgcs011bG09f.b LENGTH:415bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 415
Score = 26.7 bits (52), Expect = 0.84
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3 / +2
Query: 279 GRHHVWSHRAPMGRCH 326
G+HH +HR GR H
Sbjct: 176 GKHHTQNHRGTCGRLH 223
>CL706CT790CN1561 cl706ct790cn1561 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgap008dH09f.b,mgm
Length = 477
Score = 26.7 bits (52), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3 / +3
Query: 251 SPASPSAPMGMLMSFPRWW 195
SPAS S P +P WW
Sbjct: 309 SPASLSMPSSFFTPWPSWW 365
>CL105CT138CN417 cl105ct138cn417 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181393,gi3391423
Length = 1186
Score = 26.3 bits (51), Expect = 1.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3 / -1
Query: 335 FSGMTTPHGCSVRPYMMSPSQPLTLLVTSPASPSAPMGML 216
+ G + PH S +S + P + L+ A +AP G +
Sbjct: 211 YEGTSVPHQLSTLSRQLSGTAPTSALLYEAALGAAPFGAM 92
>MGMY004DA10F.B mgmy004dA10f.b LENGTH:278bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 278
Score = 26.3 bits (51), Expect = 1.2
Identities = 10/24 (41%), Positives = 12/24 (49%)
Frame = +1 / -2
Query: 238 GEAGEVTSKVKGWLGDIMYGRTEH 309
GEAG K WL D+ R +H
Sbjct: 88 GEAGCCVKKAHPWLADLCGSRRDH 17
>CL342CT401CN883 cl342ct401cn883 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180740,mgcm001cG
Length = 676
Score = 26.3 bits (51), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3 / +1
Query: 305 SVRPYMMSPSQPLTLLVTSPASPSAP 228
S P + SPS P+T + + AS S P
Sbjct: 541 STAPALASPSTPMTRCLQASASSSLP 618
>GI14181542 gi14181542 LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 840
Score = 26.3 bits (51), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2 / -1
Query: 281 ATSCMVAPSTHGALSSPRRSSKWSDKRDAPKVDLRN 388
ATS P+T A SPR +S+ R AP LR+
Sbjct: 213 ATSTQREPATTQARPSPRPASRAVRARTAPLRSLRS 106
>CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537287g,gi25372
Length = 1531
Score = 25.8 bits (50), Expect = 1.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3 / +1
Query: 273 LAGRHHVWSHRAPMGRCHPREE 338
+A +H W HR GRC ++
Sbjct: 1120 MARQHRPWRHRRQGGRCRGSQD 1185
>GI3392364G gi3392364g LENGTH:867bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 867
Score = 25.8 bits (50), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2 / +3
Query: 311 HGALSSPRRSSKWSDKRDAPKVDLRNG 391
HG SS R S+ WS AP +R+G
Sbjct: 414 HGTPSSARSSAPWSAPIVAPFFAVRSG 494
>MGNS007BF07F.B mgns007bF07f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 25.8 bits (50), Expect = 1.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 146 SSRRPSASASMTSEMVYF 93
SSR+PSA+ S+TSE F
Sbjct: 97 SSRKPSATESITSETPSF 150
>MGCM001DH11F.B mgcm001dH11f.b LENGTH:153bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 153
Score = 25.8 bits (50), Expect = 1.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1 / +3
Query: 454 TTMYLYVFNNQSVSFVYFPLNAVP*INFWCISFIG 350
++ + + F Q + F Y P N P CI+F G
Sbjct: 12 SSTFFFFFFFQGLIFSYLPCNVQPNTFLICITFNG 116
>GI3391896G gi3391896g LENGTH:762bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 762
Score = 25.3 bits (49), Expect = 2.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2 / +3
Query: 281 ATSCMVAPSTHGALSSPRRSSKWSDKRDAPKVDLRNGV 394
A P+ A S+ ++K D DAP +NGV
Sbjct: 291 AAETAATPAPAAATSAAPEATKEKDAADAPAAAEKNGV 404
>CL1464CT1568CN2364 cl1464ct1568cn2364 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs010dH03f.b,m
Length = 261
Score = 25.3 bits (49), Expect = 2.2
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +1 / +2
Query: 283 DIMYGRTEHPWGV 321
D ++ T HPWGV
Sbjct: 86 DALFTHTHHPWGV 124
>CL411CT477CN1074 cl411ct477cn1074 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180453; LENGTH:
Length = 786
Score = 25.3 bits (49), Expect = 2.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3 / +1
Query: 305 SVRPYMMSPSQPLTLLVTSPASPSAP 228
++RP P+ T T P +PSAP
Sbjct: 343 TIRPTAPRPTTMTTPATTPPTTPSAP 420
>CL662CT745CN1512 cl662ct745cn1512 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgap007aD01f.b,mgm
Length = 628
Score = 24.9 bits (48), Expect = 3.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3 / +2
Query: 344 YCFFSGMTTPHGCSVRPYMM 285
+ SG PHGC P M+
Sbjct: 407 FLLISGHLRPHGCCSTPLML 466
>CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi2537249g,mgap008
Length = 2004
Score = 24.9 bits (48), Expect = 3.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1 / -1
Query: 1 DDKLILDGVTRRSCLELIRERLGDE 75
DD+ +L G+ + L+++ RLG +
Sbjct: 846 DDREVLGGLLEHALLDVVTARLGQQ 772
>CL833CT929CN1704 cl833ct929cn1704 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:10; ESTS:mgmy002dD02f.b,mg
Length = 714
Score = 24.9 bits (48), Expect = 3.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3 / -1
Query: 153 RRWHCLLHLP 182
RRWHC+L P
Sbjct: 300 RRWHCVLQSP 271
>CL198CT238CN617 cl198ct238cn617 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181181,mgap008cC
Length = 834
Score = 24.9 bits (48), Expect = 3.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2 / +1
Query: 302 PSTHGALSSPRRSSKWSDKRDAPK 373
P HG LS P W+D P+
Sbjct: 58 PQPHGILSKPSVGLLWADALSDPR 129
>MGNS010AH07F.B mgns010aH07f.b LENGTH:553bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 553
Score = 24.9 bits (48), Expect = 3.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / +1
Query: 161 PAAKDSSRRPSASASMTS 108
P K SR+PSAS S TS
Sbjct: 109 PVRKPRSRQPSASPSNTS 162
>CL833CT928CN1703 cl833ct928cn1703 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgmy003dE09f.b; LEN
Length = 567
Score = 24.9 bits (48), Expect = 3.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3 / -1
Query: 153 RRWHCLLHLP 182
RRWHC+L P
Sbjct: 342 RRWHCVLQSP 313
>MGMY005CA10F.B mgmy005cA10f.b LENGTH:354bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 354
Score = 24.9 bits (48), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2 / -2
Query: 299 APSTHGALSSPRRSSKWSDKRDAPKVDLRN 388
+P++ A SSPR S S R PK+ + N
Sbjct: 182 SPASWPAFSSPRSSPPGSRGRLTPKLRVEN 93
>CL854CT950CN1725 cl854ct950cn1725 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003bB10f.b,mgc
Length = 430
Score = 24.9 bits (48), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (53%)
Frame = +3 / +3
Query: 273 LAGRHHVWSHRAPMGRCHPREEAV 344
+ R WS+R+P R PR A+
Sbjct: 99 MRARSSSWSNRSPRRRAAPRRSAL 170
>CL459CT530CN1192 cl459ct530cn1192 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3392385g,mgns012
Length = 1103
Score = 24.9 bits (48), Expect = 3.0
Identities = 10/21 (47%), Positives = 11/21 (51%)
Frame = +3 / +3
Query: 282 RHHVWSHRAPMGRCHPREEAV 344
+HH WS R HPR AV
Sbjct: 198 QHHAWSSRH*EQEGHPRWSAV 260
>CL925CT1024CN1804 cl925ct1024cn1804 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy005cB04f.b,mg
Length = 393
Score = 24.9 bits (48), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = -3 / +2
Query: 374 LLVHLFYRTIYCFFSGMTTPHGCSVR 297
LL LF I FFS + PH +R
Sbjct: 275 LLAWLFVSFIIVFFSSFSWPHDFCIR 352
>MGCS001DC11F.B mgcs001dC11f.b LENGTH:370bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 370
Score = 24.9 bits (48), Expect = 3.0
Identities = 14/58 (24%), Positives = 21/58 (36%)
Frame = +2 / +3
Query: 194 STTAERTSTSXXXXXXXXXXXXXXXXXGWATSCMVAPSTHGALSSPRRSSKWSDKRDA 367
S+T TSTS ++S S+H + S+ SS S R +
Sbjct: 141 SSTYSTTSTSSSSSAASTSSSSSATSTSSSSSAASISSSHTSSSTTSTSSTSSSTRSS 314
>CL665CT748CN1516 cl665ct748cn1516 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgap007aE10f.b,mga
Length = 772
Score = 24.9 bits (48), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2 / +1
Query: 65 LVTSMRLLSESTPSLRSWRLML 130
L S S ST +LRSWR +L
Sbjct: 232 LPVSQMSSSPSTTALRSWRRLL 297
>MGMY002AD02F.B mgmy002aD02f.b LENGTH:307bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 307
Score = 24.9 bits (48), Expect = 3.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1 / +3
Query: 16 LDGVTRRSCLELIRERLGDEYEI 84
LD + RR E ERL EYEI
Sbjct: 222 LDEIKRREEKEAEEERLAREYEI 290
>CL325CT380CN857 cl325ct380cn857 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180809,gi141801
Length = 741
Score = 24.4 bits (47), Expect = 4.1
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +1 / +3
Query: 175 ICPISQIHHRGKD 213
ICP + HHR +D
Sbjct: 444 ICPTPRFHHRSED 482
>CL295CT347CN805 cl295ct347cn805 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14180917,mgcm005a
Length = 743
Score = 24.4 bits (47), Expect = 4.1
Identities = 7/15 (46%), Positives = 9/15 (59%)
Frame = +1 / -2
Query: 274 WLGDIMYGRTEHPWG 318
W+ + GR HPWG
Sbjct: 295 WVPGELVGRLVHPWG 251
>GI14181370 gi14181370 LENGTH:715bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 715
Score = 24.4 bits (47), Expect = 4.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +3 / +2
Query: 273 LAGRHHVWSH 302
++ RHH WSH
Sbjct: 203 ISSRHHAWSH 232
>GI2537247G gi2537247g LENGTH:1011bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1011
Score = 24.4 bits (47), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (49%)
Frame = -3 / +1
Query: 287 MSPSQPLTLLVTSPASPSAPMGMLMS 210
MSP P +L T+P P P + S
Sbjct: 232 MSPPSPRLVLTTTPPPPLPPPAVRFS 309
>CL647CT728CN1494 cl647ct728cn1494 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi2537274g,mgmy002
Length = 620
Score = 24.4 bits (47), Expect = 4.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2 / +2
Query: 305 STHGALSSPRRSSKWSDKRDAPKVDLR 385
S HG LSSP S + + P + LR
Sbjct: 188 SAHGLLSSPAAGSPATGGEEGPWLPLR 268
>MGCM005BF04F.B mgcm005bF04f.b LENGTH:534bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 534
Score = 24.4 bits (47), Expect = 4.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3 / -3
Query: 308 CSVRPYMMSP 279
CS+RPYM +P
Sbjct: 364 CSIRPYMWTP 335
>CL364CT427CN947 cl364ct427cn947 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14180665,mgap008d
Length = 892
Score = 24.4 bits (47), Expect = 4.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3 / -3
Query: 260 LVTSPASPSAPMG 222
++ +PASP APMG
Sbjct: 854 ILINPASPEAPMG 816
>CL203CT243CN627 cl203ct243cn627 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181170,gi339153
Length = 1020
Score = 24.4 bits (47), Expect = 4.1
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3 / -2
Query: 281 PSQPLTLLVTSPASPSAPMGMLMSFPRWWI*EMGQMK*AVPAAKDSSRR 135
P PL P AP+ M+ W M + AVP SSRR
Sbjct: 512 PGPPLPRAPPEPTKKPAPIEPPMAIMCRWRPFMVRSNSAVPVPLSSSRR 366
>CL204CT244CN628 cl204ct244cn628 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181168,mgcm008c
Length = 898
Score = 24.4 bits (47), Expect = 4.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2 / -1
Query: 278 WATSCMVAPSTHGALSSPRRSSKWS 352
W T C PS GA R ++W+
Sbjct: 382 WWTGCRCRPSGAGAAWRARVGTRWA 308
>GI3392387G gi3392387g LENGTH:782bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 782
Score = 24.0 bits (46), Expect = 5.6
Identities = 9/27 (33%), Positives = 13/27 (47%)
Frame = -2 / +1
Query: 186 NGADEVGSASGERLEQTTLSISLHDLR 106
+ AD+ A G+R Q + HD R
Sbjct: 448 SNADKTSGAGGQRFRQQADDFNRHDAR 528
>MGNS008CH10F.B mgns008cH10f.b LENGTH:402bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 402
Score = 24.0 bits (46), Expect = 5.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1 / +3
Query: 463 SVLTTMYLYVFNNQSVSFVYFPLNAVP*INFWCISFIGPFT 341
S L MY Y N + +NA+ I+F + IGP T
Sbjct: 261 SSLPLMYSYAGANYAGHTKKVTMNAIVLISFCLGNIIGPLT 383
>MGCS008BH03F.B mgcs008bH03f.b LENGTH:303bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 303
Score = 24.0 bits (46), Expect = 5.6
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +2 / +3
Query: 278 WATSCMVAPSTHGALSSP 331
WAT C + G++SSP
Sbjct: 231 WATRCRKCQRSSGSVSSP 284
>GI14181184 gi14181184 LENGTH:687bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 687
Score = 24.0 bits (46), Expect = 5.6
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = +2 / -2
Query: 53 SVSVLVTSMRLLSESTPSLRS 115
+V VL+ M STP LR
Sbjct: 527 AVGVLLRGMPKWRRSTPGLRR 465
>CL24CT30CN111 cl24ct30cn111 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:3;
ESTS:gi14181555,gi14181122
Length = 953
Score = 24.0 bits (46), Expect = 5.6
Identities = 13/44 (29%), Positives = 16/44 (35%)
Frame = +2 / +2
Query: 89 SESTPSLRSWRLMLRVVCXXXXXXXXXXXXXXFLRSTTAERTST 220
SES S WR M++ C F RS + ST
Sbjct: 530 SESGTSSSPWRAMVQPFCSK*PSPSSSSTKPSFSRSARLRQRST 661
>CL888CT987CN1762 cl888ct987cn1762 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:50; ESTS:mgcm001aD02f.b,mg
Length = 1577
Score = 24.0 bits (46), Expect = 5.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 393 TPFRKSTFGA 364
TPFR+ST GA
Sbjct: 97 TPFRRSTSGA 68
>MGCS010BC03F.B mgcs010bC03f.b LENGTH:525bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 525
Score = 24.0 bits (46), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3 / +3
Query: 323 TTPHGCSVRPYMMSPSQPLTLLVTSPASPSAPM 225
T+P S+RP S + + PASPS P+
Sbjct: 336 TSPKSPSLRPKPRSAQR*RRPRIARPASPSWPI 434
>MGNS001AD10F.B mgns001aD10f.b LENGTH:545bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 545
Score = 24.0 bits (46), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3 / -3
Query: 419 GLFCVFPAKRRSVNQLLVHLF 357
GLFC+ A+ R NQL LF
Sbjct: 441 GLFCLLVAQLRRPNQLPDGLF 379
>GI14181218 gi14181218 LENGTH:668bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 668
Score = 24.0 bits (46), Expect = 5.6
Identities = 10/26 (38%), Positives = 11/26 (41%)
Frame = -3 / +1
Query: 323 TTPHGCSVRPYMMSPSQPLTLLVTSP 246
TTP PY PS P T+P
Sbjct: 175 TTPRSARRGPYSAPPSTPTPAASTTP 252
>CL749CT837CN1610 cl749ct837cn1610 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgmy001bH02f.b,mgm
Length = 491
Score = 24.0 bits (46), Expect = 5.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3 / +3
Query: 387 TAFSGKYTKETDWLLKT 437
T F+ YT+ +WLL T
Sbjct: 348 TTFANAYTRRDNWLLWT 398
>CL13CT18CN70 cl13ct18cn70 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:gi14181572,mgns013bF03
Length = 873
Score = 24.0 bits (46), Expect = 5.6
Identities = 7/15 (46%), Positives = 11/15 (72%)
Frame = +2 / -3
Query: 329 PRRSSKWSDKRDAPK 373
PRR+ +WS +AP+
Sbjct: 832 PRRARRWSGGHEAPR 788
>MGCM006DF10F.B mgcm006dF10f.b LENGTH:489bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 489
Score = 22.1 bits (42), Expect(2) = 7.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3 / +2
Query: 314 HGCSVRPYMMSPSQPLTLL 258
H C +RP + SPS +L
Sbjct: 116 HFCLLRPVLSSPSNQSAVL 172
Score = 19.4 bits (36), Expect(2) = 7.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Frame = -3 / +1
Query: 341 CFFSGMTTPHG 309
C FS + T G
Sbjct: 58 CSFSSVATSSG 90
>CL514CT588CN1299 cl514ct588cn1299 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3391584g; LENGTH:
Length = 1050
Score = 23.5 bits (45), Expect = 7.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3 / +1
Query: 296 PYMMSPSQPLTLLVTSPASPSAPMGM 219
P+ SPS P +P+ +AP+ +
Sbjct: 490 PWERSPSTPFVSTTPTPSGCTAPLAL 567
>MGAP007AE07F.B mgap007aE07f.b LENGTH:402bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 402
Score = 23.5 bits (45), Expect = 7.8
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +2 / -1
Query: 293 MVAPSTHGALSSPRRSSK 346
+ A S+HG L SP +S
Sbjct: 171 LAAQSSHGILQSP*VTSY 118
>MGCS009BH03F.B mgcs009bH03f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 23.5 bits (45), Expect = 7.8
Identities = 7/26 (26%), Positives = 15/26 (56%)
Frame = -3 / -3
Query: 278 SQPLTLLVTSPASPSAPMGMLMSFPR 201
S P ++ + +P ++P+G+L P
Sbjct: 287 SNPGSVALYAPGKLTSPLGVLEPAPP 210
>MGMY005CF07F.B mgmy005cF07f.b LENGTH:387bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 387
Score = 23.5 bits (45), Expect = 7.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = +3 / +3
Query: 285 HHVWSHR 305
HHVW+HR
Sbjct: 267 HHVWNHR 287
>CL95CT128CN401 cl95ct128cn401 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181411,mgcm004dD
Length = 975
Score = 23.5 bits (45), Expect = 7.8
Identities = 7/15 (46%), Positives = 7/15 (46%)
Frame = +1 / -2
Query: 274 WLGDIMYGRTEHPWG 318
W G R HPWG
Sbjct: 623 WRGSPSPARASHPWG 579
>CL339CT398CN880 cl339ct398cn880 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180746,mgcs002d
Length = 630
Score = 23.5 bits (45), Expect = 7.8
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -3 / +1
Query: 167 AVPAAKDSSRRPSASAS 117
A+PAAK +RRP + S
Sbjct: 427 ALPAAKSGTRRPRFNCS 477
>CL195CT235CN612 cl195ct235cn612 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:27; ESTS:gi14181188,gi14180
Length = 1780
Score = 23.5 bits (45), Expect = 7.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3 / +1
Query: 371 LVHLFYRTIYCFFSGMTTPHGCSVRPY 291
L H+FYR+ + +P G + PY
Sbjct: 1171 LAHIFYRSSFISQWSQRSPSG*ASAPY 1251
>MGCM012BH03F.B mgcm012bH03f.b LENGTH:439bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 439
Score = 23.5 bits (45), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = +1 / +3
Query: 382 TERRLAGNTQKRPIGY*RHKDT 447
T RRL+ +T + P + H DT
Sbjct: 6 TPRRLSSHTMREPRRHQEHPDT 71
>CL741CT827CN1600 cl741ct827cn1600 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy001bB09f.b,mgns
Length = 438
Score = 23.5 bits (45), Expect = 7.8
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +1 / +1
Query: 271 GWLGDIMYGRTEHPW 315
GW D +GR E PW
Sbjct: 340 GWPADHDHGRGELPW 384
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2823458
Number of Sequences: 4717
Number of extensions: 35419
Number of successful extensions: 1712
Number of sequences better than 10.0: 82
length of query: 166
length of database: 847,903
effective HSP length: 39
effective length of query: 126
effective length of database: 663,940
effective search space: 83656440
effective search space used: 83656440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 44 (23.1 bits)