BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_A01_A02ZT.seq
(609 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL761CT850CN1624 cl761ct850cn1624 COVERAGE:0.97; CRAWID: 1; TOTA... 78 6e-15
MGCS011DA10F.B mgcs011dA10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE... 32 0.30
CL735CT821CN1594 cl735ct821cn1594 COVERAGE:0.99; CRAWID: 1; TOTA... 32 0.30
CL10CT14CN33 cl10ct14cn33 COVERAGE:0.96; CRAWID: 2; TOTAL_ESTS:1... 32 0.30
CL674CT757CN1526 cl674ct757cn1526 COVERAGE:0.98; CRAWID: 1; TOTA... 30 1.2
MGNS011CF11F.B mgns011cF11f.b LENGTH:393bp ; DIRECTION:0 ; CLONE... 28 4.6
MGNS008DF10F.B mgns008dF10f.b LENGTH:369bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCS010CH11F.B mgcs010cH11f.b LENGTH:120bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCS009DE07F.B mgcs009dE07f.b LENGTH:465bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCS006AC03F.B mgcs006aC03f.b LENGTH:359bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCS005AC02F.B mgcs005aC02f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCS003CG07F.B mgcs003cG07f.b LENGTH:346bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCM012CH05F.B mgcm012cH05f.b LENGTH:491bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCM012CH02F.B mgcm012cH02f.b LENGTH:276bp ; DIRECTION:0 ; CLONE... 28 4.6
MGCM001AB08F.B mgcm001aB08f.b LENGTH:473bp ; DIRECTION:0 ; CLONE... 28 4.6
GI3392179G gi3392179g LENGTH:766bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.6
CL64CT90CN318 cl64ct90cn318 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS... 28 4.6
CL361CT424CN943 cl361ct424cn943 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 4.6
CL264CT310CN738 cl264ct310cn738 COVERAGE:0.99; CRAWID: 2; TOTAL_... 28 4.6
CL1CT3CN5 cl1ct3cn5 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:22; EST... 28 4.6
CL1353CT1456CN2248 cl1353ct1456cn2248 COVERAGE:0.99; CRAWID: 1; ... 28 4.6
>CL761CT850CN1624 cl761ct850cn1624 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgmy001cD03f.b,mgc
Length = 478
Score = 77.8 bits (39), Expect = 6e-15
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 322 ggcccacgcgccaacgcctttctcttcaacaccgagaccggcaagaagtacctccgcgcg 381
||||| |||||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 242 ggccctcgcgccaacgccttcctcttcaacaccgagacgggcatcaagtacctcaaggcg 301
Query: 382 ctgctcaagtaccagatcgtgcccaac 408
| ||||||||||| |||||| |||||
Sbjct: 302 atcctcaagtaccacatcgtggccaac 328
>MGCS011DA10F.B mgcs011dA10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 327
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 355 gagaccggcaagaagt 370
||||||||||||||||
Sbjct: 4 gagaccggcaagaagt 19
>CL735CT821CN1594 cl735ct821cn1594 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgmy001bA09f.b,mgm
Length = 1123
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 354 cgagaccggcaagaag 369
||||||||||||||||
Sbjct: 624 cgagaccggcaagaag 639
>CL10CT14CN33 cl10ct14cn33 COVERAGE:0.96; CRAWID: 2; TOTAL_ESTS:14;
ESTS:gi14181485,gi14181483
Length = 1983
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 349 aacaccgagaccggca 364
||||||||||||||||
Sbjct: 494 aacaccgagaccggca 479
>CL674CT757CN1526 cl674ct757cn1526 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:14; ESTS:mgap007bC10f.b,mg
Length = 978
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 527 ttggtgttgatgtgc 541
|||||||||||||||
Sbjct: 328 ttggtgttgatgtgc 314
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 523 ggcgttggtgttga 536
||||||||||||||
Sbjct: 464 ggcgttggtgttga 451
>MGNS011CF11F.B mgns011cF11f.b LENGTH:393bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 393
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 438 cagcgacgagaagc 451
||||||||||||||
Sbjct: 234 cagcgacgagaagc 247
>MGNS008DF10F.B mgns008dF10f.b LENGTH:369bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 369
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 433 tactacagcgacga 446
||||||||||||||
Sbjct: 85 tactacagcgacga 98
>MGCS010CH11F.B mgcs010cH11f.b LENGTH:120bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 120
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 456 tctcaagaagaagg 469
||||||||||||||
Sbjct: 97 tctcaagaagaagg 110
>MGCS009DE07F.B mgcs009dE07f.b LENGTH:465bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 465
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 457 ctcaagaagaaggg 470
||||||||||||||
Sbjct: 157 ctcaagaagaaggg 170
>MGCS006AC03F.B mgcs006aC03f.b LENGTH:359bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 359
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 531 tgttgatgtgcaca 544
||||||||||||||
Sbjct: 95 tgttgatgtgcaca 82
>MGCS005AC02F.B mgcs005aC02f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 423 cgacgagatctact 436
||||||||||||||
Sbjct: 263 cgacgagatctact 276
>MGCS003CG07F.B mgcs003cG07f.b LENGTH:346bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 346
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 415 ctctacagcgacga 428
||||||||||||||
Sbjct: 281 ctctacagcgacga 294
>MGCM012CH05F.B mgcm012cH05f.b LENGTH:491bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 491
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 524 gcgttggtgttgat 537
||||||||||||||
Sbjct: 395 gcgttggtgttgat 382
>MGCM012CH02F.B mgcm012cH02f.b LENGTH:276bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 276
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 350 acaccgagaccggcaaga 367
||||| ||||||||||||
Sbjct: 210 acacccagaccggcaaga 227
>MGCM001AB08F.B mgcm001aB08f.b LENGTH:473bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 473
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 250 aagtacatccacaa 263
||||||||||||||
Sbjct: 11 aagtacatccacaa 24
>GI3392179G gi3392179g LENGTH:766bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 766
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 361 ggcaagaagtacct 374
||||||||||||||
Sbjct: 756 ggcaagaagtacct 743
>CL64CT90CN318 cl64ct90cn318 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi3392316g,gi3391925g
Length = 966
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 422 gcgacgagatctac 435
||||||||||||||
Sbjct: 349 gcgacgagatctac 362
>CL361CT424CN943 cl361ct424cn943 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180679,gi141806
Length = 1270
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 381 gctgctcaagtacc 394
||||||||||||||
Sbjct: 89 gctgctcaagtacc 102
>CL264CT310CN738 cl264ct310cn738 COVERAGE:0.99; CRAWID: 2;
TOTAL_ESTS:4; ESTS:gi14180994,gi339145
Length = 958
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 401 tgcccaacatcaca 414
||||||||||||||
Sbjct: 783 tgcccaacatcaca 796
>CL1CT3CN5 cl1ct3cn5 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:22;
ESTS:gi14181592,gi14181535,gi
Length = 2160
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 359 ccggcaagaagtac 372
||||||||||||||
Sbjct: 944 ccggcaagaagtac 957
>CL1353CT1456CN2248 cl1353ct1456cn2248 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010aF11f.b,m
Length = 558
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 ccagcgtctccgaa 55
||||||||||||||
Sbjct: 96 ccagcgtctccgaa 109
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 933
Number of Sequences: 4717
Number of extensions: 933
Number of successful extensions: 275
Number of sequences better than 10.0: 21
length of query: 609
length of database: 2,543,711
effective HSP length: 15
effective length of query: 594
effective length of database: 2,472,956
effective search space: 1468935864
effective search space used: 1468935864
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)