BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_B01_C02ZT.seq
(434 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS001BA12F.B mgns001bA12f.b LENGTH:531bp ; DIRECTION:0 ; CLONE... 32 0.21
CL1086CT1188CN1975 cl1086ct1188cn1975 COVERAGE:0.99; CRAWID: 1; ... 32 0.21
MGCS004BC10F.B mgcs004bC10f.b LENGTH:411bp ; DIRECTION:0 ; CLONE... 30 0.82
MGMY003DD06F.B mgmy003dD06f.b LENGTH:402bp ; DIRECTION:0 ; CLONE... 28 3.3
MGCM008CH02F.B mgcm008cH02f.b LENGTH:502bp ; DIRECTION:0 ; CLONE... 28 3.3
GI3392271G gi3392271g LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.3
GI14181054 gi14181054 LENGTH:350bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.3
GI14180742 gi14180742 LENGTH:469bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.3
CL1300CT1403CN2194 cl1300ct1403cn2194 COVERAGE:0.97; CRAWID: 1; ... 28 3.3
CL1268CT1371CN2162 cl1268ct1371cn2162 COVERAGE:0.98; CRAWID: 1; ... 28 3.3
>MGNS001BA12F.B mgns001bA12f.b LENGTH:531bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 531
Score = 32.2 bits (16), Expect = 0.21
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 cgtcttcaacgacaag 187
||||||||||||||||
Sbjct: 264 cgtcttcaacgacaag 279
>CL1086CT1188CN1975 cl1086ct1188cn1975 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm003dH11f.b,m
Length = 615
Score = 32.2 bits (16), Expect = 0.21
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 296 aagctgatgtgggatg 311
||||||||||||||||
Sbjct: 85 aagctgatgtgggatg 70
>MGCS004BC10F.B mgcs004bC10f.b LENGTH:411bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 411
Score = 30.2 bits (15), Expect = 0.82
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 cagtctcctgttcaa 138
|||||||||||||||
Sbjct: 189 cagtctcctgttcaa 175
>MGMY003DD06F.B mgmy003dD06f.b LENGTH:402bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 402
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 ccttaccagcctgg 234
||||||||||||||
Sbjct: 62 ccttaccagcctgg 49
>MGCM008CH02F.B mgcm008cH02f.b LENGTH:502bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 502
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 311 gagaaggagggcat 324
||||||||||||||
Sbjct: 243 gagaaggagggcat 256
>GI3392271G gi3392271g LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 857
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 atgagtacttcatg 37
||||||||||||||
Sbjct: 363 atgagtacttcatg 376
>GI14181054 gi14181054 LENGTH:350bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 350
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 tcaacgacaagctg 190
||||||||||||||
Sbjct: 101 tcaacgacaagctg 114
>GI14180742 gi14180742 LENGTH:469bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 469
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 307 ggatgagaaggagg 320
||||||||||||||
Sbjct: 89 ggatgagaaggagg 102
>CL1300CT1403CN2194 cl1300ct1403cn2194 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002bC11f.b,m
Length = 422
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 tcttcaacgacaag 187
||||||||||||||
Sbjct: 298 tcttcaacgacaag 311
>CL1268CT1371CN2162 cl1268ct1371cn2162 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns001aG10f.b,m
Length = 570
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 tcttcaacgacaag 187
||||||||||||||
Sbjct: 424 tcttcaacgacaag 437
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 527
Number of Sequences: 4717
Number of extensions: 527
Number of successful extensions: 129
Number of sequences better than 10.0: 10
length of query: 434
length of database: 2,543,711
effective HSP length: 15
effective length of query: 419
effective length of database: 2,472,956
effective search space: 1036168564
effective search space used: 1036168564
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)