BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_B07_C14ZT.seq
(326 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS007BB07F.B mgns007bB07f.b LENGTH:463bp ; DIRECTION:0 ; CLONE... 28 2.4
MGMY001CB05F.B mgmy001cB05f.b LENGTH:434bp ; DIRECTION:0 ; CLONE... 28 2.4
MGCS011DG05F.B mgcs011dG05f.b LENGTH:504bp ; DIRECTION:0 ; CLONE... 28 2.4
MGCS002AH11F.B mgcs002aH11f.b LENGTH:401bp ; DIRECTION:0 ; CLONE... 28 2.4
MGNS010CB12F.B mgns010cB12f.b LENGTH:367bp ; DIRECTION:0 ; CLONE... 26 9.5
MGNS001CG02F.B mgns001cG02f.b LENGTH:412bp ; DIRECTION:0 ; CLONE... 26 9.5
MGMY006DF06F.B mgmy006dF06f.b LENGTH:209bp ; DIRECTION:0 ; CLONE... 26 9.5
MGMY004AA10F.B mgmy004aA10f.b LENGTH:474bp ; DIRECTION:0 ; CLONE... 26 9.5
MGCS008CG02F.B mgcs008cG02f.b LENGTH:343bp ; DIRECTION:0 ; CLONE... 26 9.5
MGCM007BD07F.B mgcm007bD07f.b LENGTH:406bp ; DIRECTION:0 ; CLONE... 26 9.5
MGCM003CF02F.B mgcm003cF02f.b LENGTH:327bp ; DIRECTION:0 ; CLONE... 26 9.5
GI3392173G gi3392173g LENGTH:792bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.5
GI3391615G gi3391615g LENGTH:800bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.5
GI3391604G gi3391604g LENGTH:993bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.5
GI3047303G gi3047303g LENGTH:318bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.5
GI14180426 gi14180426 LENGTH:746bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.5
CL914CT1013CN1792 cl914ct1013cn1792 COVERAGE:0.99; CRAWID: 1; TO... 26 9.5
CL648CT729CN1495 cl648ct729cn1495 COVERAGE:0.98; CRAWID: 1; TOTA... 26 9.5
CL505CT579CN1283 cl505ct579cn1283 COVERAGE:0.99; CRAWID: 3; TOTA... 26 9.5
CL483CT557CN1239 cl483ct557cn1239 COVERAGE:0.99; CRAWID: 2; TOTA... 26 9.5
CL160CT197CN527 cl160ct197cn527 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 9.5
CL12CT17CN68 cl12ct17cn68 COVERAGE:1.0; CRAWID: 2; TOTAL_ESTS:1;... 26 9.5
CL1296CT1399CN2190 cl1296ct1399cn2190 COVERAGE:0.98; CRAWID: 1; ... 26 9.5
CL1145CT1248CN2037 cl1145ct1248cn2037 COVERAGE:0.99; CRAWID: 1; ... 26 9.5
CL108CT141CN429 cl108ct141cn429 COVERAGE:1.0; CRAWID: 2; TOTAL_E... 26 9.5
>MGNS007BB07F.B mgns007bB07f.b LENGTH:463bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 463
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 gaaaaggcgagaca 211
||||||||||||||
Sbjct: 180 gaaaaggcgagaca 167
>MGMY001CB05F.B mgmy001cB05f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 434
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 264 gaggctggtgctga 277
||||||||||||||
Sbjct: 391 gaggctggtgctga 404
>MGCS011DG05F.B mgcs011dG05f.b LENGTH:504bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 504
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 258 gctcaagaggctgg 271
||||||||||||||
Sbjct: 368 gctcaagaggctgg 381
>MGCS002AH11F.B mgcs002aH11f.b LENGTH:401bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 401
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 263 agaggctggtgctg 276
||||||||||||||
Sbjct: 234 agaggctggtgctg 221
>MGNS010CB12F.B mgns010cB12f.b LENGTH:367bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 367
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 271 gtgctgatgagac 283
|||||||||||||
Sbjct: 314 gtgctgatgagac 326
>MGNS001CG02F.B mgns001cG02f.b LENGTH:412bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 412
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 121 tgtcgtttagcat 133
|||||||||||||
Sbjct: 174 tgtcgtttagcat 162
>MGMY006DF06F.B mgmy006dF06f.b LENGTH:209bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 209
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 64 tggagtggtacgc 76
|||||||||||||
Sbjct: 83 tggagtggtacgc 71
>MGMY004AA10F.B mgmy004aA10f.b LENGTH:474bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 474
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 54 gagaagatcctgg 66
|||||||||||||
Sbjct: 351 gagaagatcctgg 363
>MGCS008CG02F.B mgcs008cG02f.b LENGTH:343bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 343
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 56 gaagatcctggag 68
|||||||||||||
Sbjct: 98 gaagatcctggag 110
>MGCM007BD07F.B mgcm007bD07f.b LENGTH:406bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 406
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 159 ggcattgcagcgc 171
|||||||||||||
Sbjct: 233 ggcattgcagcgc 245
>MGCM003CF02F.B mgcm003cF02f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 327
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 263 agaggctggtgctgatg 279
||||||||||| |||||
Sbjct: 207 agaggctggtgatgatg 223
>GI3392173G gi3392173g LENGTH:792bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 792
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 50 gccagagaagatc 62
|||||||||||||
Sbjct: 331 gccagagaagatc 343
>GI3391615G gi3391615g LENGTH:800bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 800
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 100 ggccggaggtaccgtgg 116
|||| ||||||||||||
Sbjct: 185 ggccagaggtaccgtgg 201
>GI3391604G gi3391604g LENGTH:993bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 993
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 275 tgatgagactgtg 287
|||||||||||||
Sbjct: 516 tgatgagactgtg 504
>GI3047303G gi3047303g LENGTH:318bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 318
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 252 gctctggctcaag 264
|||||||||||||
Sbjct: 91 gctctggctcaag 103
>GI14180426 gi14180426 LENGTH:746bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 746
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 137 gaagctggcgggt 149
|||||||||||||
Sbjct: 96 gaagctggcgggt 84
>CL914CT1013CN1792 cl914ct1013cn1792 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:19; ESTS:mgmy005bB08f.b,m
Length = 879
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 248 ctgggctctggct 260
|||||||||||||
Sbjct: 867 ctgggctctggct 879
>CL648CT729CN1495 cl648ct729cn1495 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:20; ESTS:gi2537266g,mgmy00
Length = 1058
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 102 ccggaggtaccgt 114
|||||||||||||
Sbjct: 804 ccggaggtaccgt 792
>CL505CT579CN1283 cl505ct579cn1283 COVERAGE:0.99; CRAWID: 3;
TOTAL_ESTS:5; ESTS:gi3391592g,mgcs004
Length = 1021
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 14 aggattcctcccc 26
|||||||||||||
Sbjct: 926 aggattcctcccc 914
>CL483CT557CN1239 cl483ct557cn1239 COVERAGE:0.99; CRAWID: 2;
TOTAL_ESTS:5; ESTS:gi3391800g,mgmy006
Length = 777
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 248 ctgggctctggct 260
|||||||||||||
Sbjct: 506 ctgggctctggct 518
>CL160CT197CN527 cl160ct197cn527 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181287,mgap008dE
Length = 928
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 258 gctcaagaggctg 270
|||||||||||||
Sbjct: 46 gctcaagaggctg 58
>CL12CT17CN68 cl12ct17cn68 COVERAGE:1.0; CRAWID: 2; TOTAL_ESTS:1;
ESTS:gi3392257g; LENGTH:879b
Length = 879
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 176 tgcgcttaggggg 188
|||||||||||||
Sbjct: 172 tgcgcttaggggg 160
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 158 gggcattgcagcg 170
|||||||||||||
Sbjct: 221 gggcattgcagcg 209
>CL1296CT1399CN2190 cl1296ct1399cn2190 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns002aH07f.b,m
Length = 367
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 212 gcacgctgaaacg 224
|||||||||||||
Sbjct: 187 gcacgctgaaacg 199
>CL1145CT1248CN2037 cl1145ct1248cn2037 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm005bG07f.b,m
Length = 446
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 252 gctctggctcaag 264
|||||||||||||
Sbjct: 212 gctctggctcaag 224
>CL108CT141CN429 cl108ct141cn429 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3392001g; LENGTH:7
Length = 797
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 251 ggctctggctcaa 263
|||||||||||||
Sbjct: 40 ggctctggctcaa 28
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 368
Number of Sequences: 4717
Number of extensions: 368
Number of successful extensions: 112
Number of sequences better than 10.0: 26
length of query: 326
length of database: 2,543,711
effective HSP length: 15
effective length of query: 311
effective length of database: 2,472,956
effective search space: 769089316
effective search space used: 769089316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)