BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_D07_G14ZT.seq
(444 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM006AG12F.B mgcm006aG12f.b LENGTH:554bp ; DIRECTION:0 ; CLONE... 32 0.21
MGMY003DC02F.B mgmy003dC02f.b LENGTH:383bp ; DIRECTION:0 ; CLONE... 30 0.84
MGCM004CG01F.B mgcm004cG01f.b LENGTH:385bp ; DIRECTION:0 ; CLONE... 30 0.84
CL614CT692CN1444 cl614ct692cn1444 COVERAGE:0.98; CRAWID: 1; TOTA... 30 0.84
MGNS007DD08F.B mgns007dD08f.b LENGTH:520bp ; DIRECTION:0 ; CLONE... 28 3.3
MGCS011AB01F.B mgcs011aB01f.b LENGTH:367bp ; DIRECTION:0 ; CLONE... 28 3.3
MGCS005DF01F.B mgcs005dF01f.b LENGTH:510bp ; DIRECTION:0 ; CLONE... 28 3.3
MGCM007AD06F.B mgcm007aD06f.b LENGTH:417bp ; DIRECTION:0 ; CLONE... 28 3.3
GI14180948 gi14180948 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.3
GI14180826 gi14180826 LENGTH:706bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.3
CL417CT485CN1090 cl417ct485cn1090 COVERAGE:1.0; CRAWID: 7; TOTAL... 28 3.3
>MGCM006AG12F.B mgcm006aG12f.b LENGTH:554bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 554
Score = 32.2 bits (16), Expect = 0.21
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 242 ctggaaggcaacccac 257
||||||||||||||||
Sbjct: 238 ctggaaggcaacccac 223
>MGMY003DC02F.B mgmy003dC02f.b LENGTH:383bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 383
Score = 30.2 bits (15), Expect = 0.84
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 gaggagaaggagaca 129
|||||||||||||||
Sbjct: 137 gaggagaaggagaca 123
>MGCM004CG01F.B mgcm004cG01f.b LENGTH:385bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 385
Score = 30.2 bits (15), Expect = 0.84
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 cagaggagaaggaga 127
|||||||||||||||
Sbjct: 301 cagaggagaaggaga 287
>CL614CT692CN1444 cl614ct692cn1444 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:8; ESTS:gi3391497g,mgmy003
Length = 1117
Score = 30.2 bits (15), Expect = 0.84
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 cttggagctggagtg 71
|||||||||||||||
Sbjct: 288 cttggagctggagtg 274
>MGNS007DD08F.B mgns007dD08f.b LENGTH:520bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 520
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 gaaattgtggagga 89
||||||||||||||
Sbjct: 143 gaaattgtggagga 130
>MGCS011AB01F.B mgcs011aB01f.b LENGTH:367bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 367
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 aagaagacgacaaa 152
||||||||||||||
Sbjct: 193 aagaagacgacaaa 206
>MGCS005DF01F.B mgcs005dF01f.b LENGTH:510bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 510
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 cgatattatcttgg 61
||||||||||||||
Sbjct: 252 cgatattatcttgg 239
>MGCM007AD06F.B mgcm007aD06f.b LENGTH:417bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 417
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 263 atctggacgagaag 276
||||||||||||||
Sbjct: 315 atctggacgagaag 302
>GI14180948 gi14180948 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 645
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 300 atggtgcaaggagt 313
||||||||||||||
Sbjct: 624 atggtgcaaggagt 611
>GI14180826 gi14180826 LENGTH:706bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 706
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 270 cgagaagcttgaac 283
||||||||||||||
Sbjct: 198 cgagaagcttgaac 185
>CL417CT485CN1090 cl417ct485cn1090 COVERAGE:1.0; CRAWID: 7;
TOTAL_ESTS:1; ESTS:gi3392211g; LENGTH:
Length = 869
Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 272 agaagcttgaacag 285
||||||||||||||
Sbjct: 527 agaagcttgaacag 514
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 652
Number of Sequences: 4717
Number of extensions: 652
Number of successful extensions: 178
Number of sequences better than 10.0: 12
length of query: 444
length of database: 2,543,711
effective HSP length: 15
effective length of query: 429
effective length of database: 2,472,956
effective search space: 1060898124
effective search space used: 1060898124
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)