BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_E04_I08ZT.seq
(421 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL534CT608CN1331 cl534ct608cn1331 COVERAGE:0.97; CRAWID: 1; TOTA... 30 0.80
MGNS010AA12F.B mgns010aA12f.b LENGTH:431bp ; DIRECTION:0 ; CLONE... 28 3.2
MGCS010AA09F.B mgcs010aA09f.b LENGTH:513bp ; DIRECTION:0 ; CLONE... 28 3.2
MGCS004CE07F.B mgcs004cE07f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 28 3.2
CL921CT1020CN1800 cl921ct1020cn1800 COVERAGE:0.99; CRAWID: 1; TO... 28 3.2
>CL534CT608CN1331 cl534ct608cn1331 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3391941g,mgmy004
Length = 776
Score = 30.2 bits (15), Expect = 0.80
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 ctattggcctgagaa 134
|||||||||||||||
Sbjct: 739 ctattggcctgagaa 753
>MGNS010AA12F.B mgns010aA12f.b LENGTH:431bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 431
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 gccaccatcacttg 73
||||||||||||||
Sbjct: 9 gccaccatcacttg 22
>MGCS010AA09F.B mgcs010aA09f.b LENGTH:513bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 513
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 gccccaccgctcaa 231
||||||||||||||
Sbjct: 370 gccccaccgctcaa 357
>MGCS004CE07F.B mgcs004cE07f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 286 cttgtctctgacct 299
||||||||||||||
Sbjct: 103 cttgtctctgacct 90
>CL921CT1020CN1800 cl921ct1020cn1800 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy005bH11f.b,mg
Length = 537
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 catcgccgacaact 107
||||||||||||||
Sbjct: 154 catcgccgacaact 167
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 401
Number of Sequences: 4717
Number of extensions: 401
Number of successful extensions: 92
Number of sequences better than 10.0: 5
length of query: 421
length of database: 2,543,711
effective HSP length: 15
effective length of query: 406
effective length of database: 2,472,956
effective search space: 1004020136
effective search space used: 1004020136
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)