BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_F08_K16ZT.seq
(312 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI3391411G gi3391411g LENGTH:859bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 0.58
CL565CT639CN1376 cl565ct639cn1376 COVERAGE:0.99; CRAWID: 1; TOTA... 30 0.58
MGNS013DG09F.B mgns013dG09f.b LENGTH:442bp ; DIRECTION:0 ; CLONE... 28 2.3
MGCM004BD01F.B mgcm004bD01f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 28 2.3
GI14181396 gi14181396 LENGTH:669bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 2.3
MGNS011DG11F.B mgns011dG11f.b LENGTH:438bp ; DIRECTION:0 ; CLONE... 26 9.1
MGNS011BB09F.B mgns011bB09f.b LENGTH:454bp ; DIRECTION:0 ; CLONE... 26 9.1
MGNS009DC05F.B mgns009dC05f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 26 9.1
MGNS008BG03F.B mgns008bG03f.b LENGTH:395bp ; DIRECTION:0 ; CLONE... 26 9.1
MGNS001BB11F.B mgns001bB11f.b LENGTH:565bp ; DIRECTION:0 ; CLONE... 26 9.1
MGCS005DC04F.B mgcs005dC04f.b LENGTH:359bp ; DIRECTION:0 ; CLONE... 26 9.1
GI3392301G gi3392301g LENGTH:856bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
GI3392219G gi3392219g LENGTH:826bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
GI14181124 gi14181124 LENGTH:666bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
GI14181103 gi14181103 LENGTH:643bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
GI14180866 gi14180866 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
GI14180349 gi14180349 LENGTH:742bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
GI14180175 gi14180175 LENGTH:762bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.1
CL959CT1059CN1839 cl959ct1059cn1839 COVERAGE:0.96; CRAWID: 1; TO... 26 9.1
CL928CT1027CN1807 cl928ct1027cn1807 COVERAGE:1.0; CRAWID: 1; TOT... 26 9.1
CL798CT888CN1662 cl798ct888cn1662 COVERAGE:1.0; CRAWID: 1; TOTAL... 26 9.1
CL798CT887CN1661 cl798ct887cn1661 COVERAGE:1.0; CRAWID: 1; TOTAL... 26 9.1
CL651CT733CN1500 cl651ct733cn1500 COVERAGE:0.99; CRAWID: 1; TOTA... 26 9.1
CL50CT73CN265 cl50ct73cn265 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 26 9.1
CL489CT563CN1251 cl489ct563cn1251 COVERAGE:1.0; CRAWID: 1; TOTAL... 26 9.1
CL431CT500CN1132 cl431ct500cn1132 COVERAGE:0.97; CRAWID: 1; TOTA... 26 9.1
CL40CT51CN161 cl40ct51cn161 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 26 9.1
CL265CT311CN740 cl265ct311cn740 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 9.1
CL236CT279CN688 cl236ct279cn688 COVERAGE:0.95; CRAWID: 2; TOTAL_... 26 9.1
CL179CT216CN565 cl179ct216cn565 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 9.1
CL113CT146CN437 cl113ct146cn437 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 9.1
>GI3391411G gi3391411g LENGTH:859bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 859
Score = 30.2 bits (15), Expect = 0.58
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 cgcgaacaaatcatc 281
|||||||||||||||
Sbjct: 100 cgcgaacaaatcatc 114
>CL565CT639CN1376 cl565ct639cn1376 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi3391794g,mgcm002
Length = 866
Score = 30.2 bits (15), Expect = 0.58
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 atctgcgccgaattc 189
|||||||||||||||
Sbjct: 526 atctgcgccgaattc 540
>MGNS013DG09F.B mgns013dG09f.b LENGTH:442bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 442
Score = 28.2 bits (14), Expect = 2.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 277 tcatccgccaatgt 290
||||||||||||||
Sbjct: 223 tcatccgccaatgt 210
>MGCM004BD01F.B mgcm004bD01f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 28.2 bits (14), Expect = 2.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 tcaaaatccccttg 69
||||||||||||||
Sbjct: 194 tcaaaatccccttg 207
>GI14181396 gi14181396 LENGTH:669bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 669
Score = 28.2 bits (14), Expect = 2.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 242 ggcgcaagcgcaag 255
||||||||||||||
Sbjct: 40 ggcgcaagcgcaag 53
>MGNS011DG11F.B mgns011dG11f.b LENGTH:438bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 438
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 179 gcgccgaattcga 191
|||||||||||||
Sbjct: 6 gcgccgaattcga 18
>MGNS011BB09F.B mgns011bB09f.b LENGTH:454bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 454
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 51 attcttcaaaatc 63
|||||||||||||
Sbjct: 50 attcttcaaaatc 38
>MGNS009DC05F.B mgns009dC05f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 74 cagggcaaagtcg 86
|||||||||||||
Sbjct: 134 cagggcaaagtcg 122
>MGNS008BG03F.B mgns008bG03f.b LENGTH:395bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 395
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 209 ttatcgacaaggc 221
|||||||||||||
Sbjct: 376 ttatcgacaaggc 388
>MGNS001BB11F.B mgns001bB11f.b LENGTH:565bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 565
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 252 caagaaccaggac 264
|||||||||||||
Sbjct: 269 caagaaccaggac 281
>MGCS005DC04F.B mgcs005dC04f.b LENGTH:359bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 359
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 145 agcaaggaggtgt 157
|||||||||||||
Sbjct: 167 agcaaggaggtgt 179
>GI3392301G gi3392301g LENGTH:856bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 856
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 117 ttcctctctatgc 129
|||||||||||||
Sbjct: 284 ttcctctctatgc 296
>GI3392219G gi3392219g LENGTH:826bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 826
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 54 cttcaaaatcccc 66
|||||||||||||
Sbjct: 464 cttcaaaatcccc 476
>GI14181124 gi14181124 LENGTH:666bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 666
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 162 tttaatgctcggt 174
|||||||||||||
Sbjct: 278 tttaatgctcggt 266
>GI14181103 gi14181103 LENGTH:643bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 643
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 235 tcgtctcggcgca 247
|||||||||||||
Sbjct: 434 tcgtctcggcgca 446
>GI14180866 gi14180866 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 645
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 166 atgctcggtatct 178
|||||||||||||
Sbjct: 134 atgctcggtatct 146
>GI14180349 gi14180349 LENGTH:742bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 742
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 118 tcctctctatgct 130
|||||||||||||
Sbjct: 362 tcctctctatgct 374
>GI14180175 gi14180175 LENGTH:762bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 762
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 39 ttgtttggaaaca 51
|||||||||||||
Sbjct: 302 ttgtttggaaaca 314
>CL959CT1059CN1839 cl959ct1059cn1839 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:11; ESTS:mgcm001aC11f.b,m
Length = 552
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 271 aacaaatcatccg 283
|||||||||||||
Sbjct: 78 aacaaatcatccg 90
>CL928CT1027CN1807 cl928ct1027cn1807 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy005cF06f.b,mgc
Length = 834
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 127 tgcttgggcagga 139
|||||||||||||
Sbjct: 161 tgcttgggcagga 149
>CL798CT888CN1662 cl798ct888cn1662 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgmy002aC03f.b; LEN
Length = 451
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 212 tcgacaaggctga 224
|||||||||||||
Sbjct: 236 tcgacaaggctga 248
>CL798CT887CN1661 cl798ct887cn1661 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgns004dE05f.b; LEN
Length = 556
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 212 tcgacaaggctga 224
|||||||||||||
Sbjct: 194 tcgacaaggctga 206
>CL651CT733CN1500 cl651ct733cn1500 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi2537261g,gi25372
Length = 2031
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 134 gcaggaggctgag 146
|||||||||||||
Sbjct: 266 gcaggaggctgag 254
>CL50CT73CN265 cl50ct73cn265 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:gi14181499,mgcs008aG0
Length = 780
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 246 caagcgcaagaac 258
|||||||||||||
Sbjct: 646 caagcgcaagaac 658
>CL489CT563CN1251 cl489ct563cn1251 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi3392189g; LENGTH:
Length = 806
Score = 26.3 bits (13), Expect = 9.1
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 248 agcgcaagaaccaggac 264
||||||||||| |||||
Sbjct: 357 agcgcaagaacaaggac 373
>CL431CT500CN1132 cl431ct500cn1132 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180216,gi14180
Length = 802
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 127 tgcttgggcagga 139
|||||||||||||
Sbjct: 465 tgcttgggcagga 453
>CL40CT51CN161 cl40ct51cn161 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgcm002cC08f.b,mgcm00
Length = 474
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 261 ggactccgcgaac 273
|||||||||||||
Sbjct: 154 ggactccgcgaac 142
>CL265CT311CN740 cl265ct311cn740 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180992,gi3391777
Length = 1398
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 129 cttgggcaggagg 141
|||||||||||||
Sbjct: 667 cttgggcaggagg 655
>CL236CT279CN688 cl236ct279cn688 COVERAGE:0.95; CRAWID: 2;
TOTAL_ESTS:2; ESTS:gi14181006,gi339137
Length = 1300
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 56 tcaaaatcccctt 68
|||||||||||||
Sbjct: 996 tcaaaatcccctt 1008
>CL179CT216CN565 cl179ct216cn565 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181237,mgmy001d
Length = 1202
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 29 actggtgaccttg 41
|||||||||||||
Sbjct: 315 actggtgaccttg 327
>CL113CT146CN437 cl113ct146cn437 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181377,mgns009a
Length = 1404
Score = 26.3 bits (13), Expect = 9.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 36 accttgtttggaa 48
|||||||||||||
Sbjct: 679 accttgtttggaa 691
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 449
Number of Sequences: 4717
Number of extensions: 449
Number of successful extensions: 130
Number of sequences better than 10.0: 33
length of query: 312
length of database: 2,543,711
effective HSP length: 15
effective length of query: 297
effective length of database: 2,472,956
effective search space: 734467932
effective search space used: 734467932
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)