BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_G04_M08ZT.seq
         (358 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGNS007CC10F.B mgns007cC10f.b LENGTH:495bp ; DIRECTION:0 ; CLONE...    28  2.7
MGCM008DB08F.B mgcm008dB08f.b LENGTH:501bp ; DIRECTION:0 ; CLONE...    28  2.7
GI3391702G gi3391702g LENGTH:749bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  2.7
CL571CT645CN1384 cl571ct645cn1384 COVERAGE:0.98; CRAWID: 1; TOTA...    28  2.7
CL510CT584CN1293 cl510ct584cn1293 COVERAGE:0.99; CRAWID: 1; TOTA...    28  2.7

>MGNS007CC10F.B mgns007cC10f.b LENGTH:495bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 495

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 112 ttgtcgtcggttca 125
           ||||||||||||||
Sbjct: 42  ttgtcgtcggttca 55



>MGCM008DB08F.B mgcm008dB08f.b LENGTH:501bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 501

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 190 gatcggatcccaca 203
           ||||||||||||||
Sbjct: 442 gatcggatcccaca 429



>GI3391702G gi3391702g LENGTH:749bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 749

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 340 acaagacctttgat 353
           ||||||||||||||
Sbjct: 82  acaagacctttgat 95



>CL571CT645CN1384 cl571ct645cn1384 COVERAGE:0.98; CRAWID: 1;
           TOTAL_ESTS:4; ESTS:gi3391753g,gi25372
          Length = 860

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 288 cctttggacgacgt 301
           ||||||||||||||
Sbjct: 54  cctttggacgacgt 41



>CL510CT584CN1293 cl510ct584cn1293 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:17; ESTS:gi3392087g,mgns00
          Length = 844

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 340 acaagacctttgat 353
           ||||||||||||||
Sbjct: 572 acaagacctttgat 585



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 405
Number of Sequences: 4717
Number of extensions: 405
Number of successful extensions: 110
Number of sequences better than 10.0: 6
length of query: 358
length of database: 2,543,711
effective HSP length: 15
effective length of query: 343
effective length of database: 2,472,956
effective search space: 848223908
effective search space used: 848223908
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)