BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_G07_M14ZT.seq
(269 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL267CT315CN750 cl267ct315cn750 COVERAGE:0.99; CRAWID: 1; TOTAL_... 30 0.50
CL267CT314CN746 cl267ct314cn746 COVERAGE:1.0; CRAWID: 2; TOTAL_E... 30 0.50
MGCM010DG01F.B mgcm010dG01f.b LENGTH:421bp ; DIRECTION:0 ; CLONE... 28 2.0
MGCM003DC08F.B mgcm003dC08f.b LENGTH:444bp ; DIRECTION:0 ; CLONE... 28 2.0
CL82CT115CN382 cl82ct115cn382 COVERAGE:0.98; CRAWID: 1; TOTAL_ES... 28 2.0
CL1260CT1363CN2153 cl1260ct1363cn2153 COVERAGE:0.97; CRAWID: 1; ... 28 2.0
MGNS011DF06F.B mgns011dF06f.b LENGTH:428bp ; DIRECTION:0 ; CLONE... 26 7.8
MGCS004BD12F.B mgcs004bD12f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 26 7.8
MGCM001AC05F.B mgcm001aC05f.b LENGTH:176bp ; DIRECTION:0 ; CLONE... 26 7.8
GI3392040G gi3392040g LENGTH:862bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.8
GI3391945G gi3391945g LENGTH:786bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.8
CL567CT641CN1378 cl567ct641cn1378 COVERAGE:0.98; CRAWID: 1; TOTA... 26 7.8
CL478CT550CN1228 cl478ct550cn1228 COVERAGE:1.0; CRAWID: 2; TOTAL... 26 7.8
CL38CT44CN153 cl38ct44cn153 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS... 26 7.8
CL1120CT1223CN2010 cl1120ct1223cn2010 COVERAGE:1.0; CRAWID: 1; T... 26 7.8
>CL267CT315CN750 cl267ct315cn750 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgmy002aH04f.b,mgmy
Length = 672
Score = 30.2 bits (15), Expect = 0.50
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gaggttggtctcctc 162
|||||||||||||||
Sbjct: 196 gaggttggtctcctc 182
>CL267CT314CN746 cl267ct314cn746 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi14180505; LENGTH:8
Length = 863
Score = 30.2 bits (15), Expect = 0.50
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gaggttggtctcctc 162
|||||||||||||||
Sbjct: 135 gaggttggtctcctc 121
>MGCM010DG01F.B mgcm010dG01f.b LENGTH:421bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 421
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 tgagtacgaggact 22
||||||||||||||
Sbjct: 270 tgagtacgaggact 283
>MGCM003DC08F.B mgcm003dC08f.b LENGTH:444bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 444
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tggtctcctccgag 166
||||||||||||||
Sbjct: 291 tggtctcctccgag 278
>CL82CT115CN382 cl82ct115cn382 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181431,gi3391740
Length = 848
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 ctcctccgagtctt 170
||||||||||||||
Sbjct: 341 ctcctccgagtctt 328
>CL1260CT1363CN2153 cl1260ct1363cn2153 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm012dD10f.b,m
Length = 1060
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tggtctcctccgag 166
||||||||||||||
Sbjct: 600 tggtctcctccgag 587
>MGNS011DF06F.B mgns011dF06f.b LENGTH:428bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 428
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 216 taaaaagaagttg 228
|||||||||||||
Sbjct: 301 taaaaagaagttg 289
>MGCS004BD12F.B mgcs004bD12f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 5 aggatgagtacga 17
|||||||||||||
Sbjct: 294 aggatgagtacga 306
>MGCM001AC05F.B mgcm001aC05f.b LENGTH:176bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 176
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 247 ttactatgtactt 259
|||||||||||||
Sbjct: 100 ttactatgtactt 88
>GI3392040G gi3392040g LENGTH:862bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 862
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 24 ggaaggagttttt 36
|||||||||||||
Sbjct: 187 ggaaggagttttt 199
>GI3391945G gi3391945g LENGTH:786bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 786
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 114 atcctttgggaag 126
|||||||||||||
Sbjct: 724 atcctttgggaag 736
>CL567CT641CN1378 cl567ct641cn1378 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391766g,mgcs008
Length = 766
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 216 taaaaagaagttg 228
|||||||||||||
Sbjct: 142 taaaaagaagttg 154
>CL478CT550CN1228 cl478ct550cn1228 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:2; ESTS:gi3392299g,mgcs011d
Length = 1297
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 195 tgtatttgtcgac 207
|||||||||||||
Sbjct: 712 tgtatttgtcgac 700
>CL38CT44CN153 cl38ct44cn153 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:5;
ESTS:gi14181524,gi3392129g
Length = 906
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 118 tttgggaagagaa 130
|||||||||||||
Sbjct: 761 tttgggaagagaa 773
>CL1120CT1223CN2010 cl1120ct1223cn2010 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgcm004dC06f.b; L
Length = 497
Score = 26.3 bits (13), Expect = 7.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 157 ctcctccgagtct 169
|||||||||||||
Sbjct: 103 ctcctccgagtct 91
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 297
Number of Sequences: 4717
Number of extensions: 297
Number of successful extensions: 80
Number of sequences better than 10.0: 15
length of query: 269
length of database: 2,543,711
effective HSP length: 14
effective length of query: 255
effective length of database: 2,477,673
effective search space: 631806615
effective search space used: 631806615
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)