BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_H02_O04ZT.seq
(333 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI14180644 gi14180644 LENGTH:737bp ; DIRECTION:0 ; CLONE: n/a ; ... 32 0.16
MGAP010CF09F.B mgap010cF09f.b LENGTH:240bp ; DIRECTION:0 ; CLONE... 28 2.5
CL985CT1086CN1868 cl985ct1086cn1868 COVERAGE:1.0; CRAWID: 1; TOT... 28 2.5
CL136CT173CN484 cl136ct173cn484 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 2.5
CL136CT172CN482 cl136ct172cn482 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 2.5
CL1092CT1195CN1982 cl1092ct1195cn1982 COVERAGE:0.99; CRAWID: 1; ... 28 2.5
MGCS006DH04F.B mgcs006dH04f.b LENGTH:440bp ; DIRECTION:0 ; CLONE... 26 9.8
MGCS006CG04F.B mgcs006cG04f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 26 9.8
MGCS005DC04F.B mgcs005dC04f.b LENGTH:359bp ; DIRECTION:0 ; CLONE... 26 9.8
MGCM007BD07F.B mgcm007bD07f.b LENGTH:406bp ; DIRECTION:0 ; CLONE... 26 9.8
MGCM006BD01F.B mgcm006bD01f.b LENGTH:494bp ; DIRECTION:0 ; CLONE... 26 9.8
MGCM003BF05F.B mgcm003bF05f.b LENGTH:238bp ; DIRECTION:0 ; CLONE... 26 9.8
GI2537320G gi2537320g LENGTH:951bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.8
GI14180436 gi14180436 LENGTH:763bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.8
GI14180176 gi14180176 LENGTH:660bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.8
CL983CT1084CN1866 cl983ct1084cn1866 COVERAGE:0.99; CRAWID: 1; TO... 26 9.8
CL967CT1067CN1848 cl967ct1067cn1848 COVERAGE:0.97; CRAWID: 1; TO... 26 9.8
CL69CT99CN345 cl69ct99cn345 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 26 9.8
CL685CT768CN1537 cl685ct768cn1537 COVERAGE:0.98; CRAWID: 1; TOTA... 26 9.8
CL662CT745CN1512 cl662ct745cn1512 COVERAGE:0.97; CRAWID: 1; TOTA... 26 9.8
CL39CT45CN154 cl39ct45cn154 COVERAGE:0.98; CRAWID: 2; TOTAL_ESTS... 26 9.8
CL284CT336CN789 cl284ct336cn789 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 9.8
CL155CT192CN520 cl155ct192cn520 COVERAGE:0.95; CRAWID: 1; TOTAL_... 26 9.8
CL1455CT1559CN2355 cl1455ct1559cn2355 COVERAGE:0.99; CRAWID: 1; ... 26 9.8
CL1264CT1367CN2157 cl1264ct1367cn2157 COVERAGE:0.97; CRAWID: 1; ... 26 9.8
CL112CT145CN434 cl112ct145cn434 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 9.8
CL1118CT1221CN2008 cl1118ct1221cn2008 COVERAGE:0.96; CRAWID: 1; ... 26 9.8
CL1056CT1157CN1943 cl1056ct1157cn1943 COVERAGE:0.99; CRAWID: 1; ... 26 9.8
CL1044CT1145CN1928 cl1044ct1145cn1928 COVERAGE:0.99; CRAWID: 1; ... 26 9.8
>GI14180644 gi14180644 LENGTH:737bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 737
Score = 32.2 bits (16), Expect = 0.16
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 aaagctggtgctgttg 96
||||||||||||||||
Sbjct: 283 aaagctggtgctgttg 268
>MGAP010CF09F.B mgap010cF09f.b LENGTH:240bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 240
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 atgctgcgtttgtt 152
||||||||||||||
Sbjct: 166 atgctgcgtttgtt 153
>CL985CT1086CN1868 cl985ct1086cn1868 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001bH04f.b,mgc
Length = 443
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 aggaacttgaacgc 247
||||||||||||||
Sbjct: 51 aggaacttgaacgc 38
>CL136CT173CN484 cl136ct173cn484 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:36; ESTS:gi14180890,gi14180
Length = 1169
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 584 agctggtgctgttg 571
>CL136CT172CN482 cl136ct172cn482 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181336,gi339203
Length = 999
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 518 agctggtgctgttg 505
>CL1092CT1195CN1982 cl1092ct1195cn1982 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgcm004aD08f.b,m
Length = 579
Score = 28.2 bits (14), Expect = 2.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 195 taagggatttgaggttgg 212
||||||||||||| ||||
Sbjct: 153 taagggatttgagtttgg 136
>MGCS006DH04F.B mgcs006dH04f.b LENGTH:440bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 440
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 139 atgctgcgtttgt 151
|||||||||||||
Sbjct: 292 atgctgcgtttgt 304
>MGCS006CG04F.B mgcs006cG04f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 120 aattacaggcccg 132
|||||||||||||
Sbjct: 350 aattacaggcccg 338
>MGCS005DC04F.B mgcs005dC04f.b LENGTH:359bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 359
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 170 caatgtcgaggtt 182
|||||||||||||
Sbjct: 33 caatgtcgaggtt 21
>MGCM007BD07F.B mgcm007bD07f.b LENGTH:406bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 406
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 318 caagattgaacat 330
|||||||||||||
Sbjct: 101 caagattgaacat 113
>MGCM006BD01F.B mgcm006bD01f.b LENGTH:494bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 494
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 90 gctgttgataatg 102
|||||||||||||
Sbjct: 139 gctgttgataatg 127
>MGCM003BF05F.B mgcm003bF05f.b LENGTH:238bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 238
Score = 26.3 bits (13), Expect = 9.8
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 139 atgctgcgtttgttctc 155
||||| |||||||||||
Sbjct: 93 atgctccgtttgttctc 77
>GI2537320G gi2537320g LENGTH:951bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 951
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 170 caatgtcgaggtt 182
|||||||||||||
Sbjct: 355 caatgtcgaggtt 343
>GI14180436 gi14180436 LENGTH:763bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 763
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 216 agcgtcgggagga 228
|||||||||||||
Sbjct: 539 agcgtcgggagga 527
>GI14180176 gi14180176 LENGTH:660bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 660
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 270 accataccaactg 282
|||||||||||||
Sbjct: 171 accataccaactg 183
>CL983CT1084CN1866 cl983ct1084cn1866 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:15; ESTS:mgcm001bH02f.b,m
Length = 1221
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 125 caggcccgggtac 137
|||||||||||||
Sbjct: 770 caggcccgggtac 758
>CL967CT1067CN1848 cl967ct1067cn1848 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001aG09f.b,mg
Length = 545
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 225 aggactacaagga 237
|||||||||||||
Sbjct: 347 aggactacaagga 359
>CL69CT99CN345 cl69ct99cn345 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:13;
ESTS:gi14181456,gi1418121
Length = 1739
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 34 atgctgagaatcc 46
|||||||||||||
Sbjct: 1528 atgctgagaatcc 1540
>CL685CT768CN1537 cl685ct768cn1537 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgap007cF08f.b,mgn
Length = 875
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 256 acaacagtgctat 268
|||||||||||||
Sbjct: 151 acaacagtgctat 163
>CL662CT745CN1512 cl662ct745cn1512 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgap007aD01f.b,mgm
Length = 628
Score = 26.3 bits (13), Expect = 9.8
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 207 ggttggtgaagcgtcgg 223
|||||||||||| ||||
Sbjct: 40 ggttggtgaagcttcgg 24
>CL39CT45CN154 cl39ct45cn154 COVERAGE:0.98; CRAWID: 2; TOTAL_ESTS:18;
ESTS:gi14181521,mgmy001bG
Length = 1535
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 70 aggctgctatgaa 82
|||||||||||||
Sbjct: 1351 aggctgctatgaa 1339
>CL284CT336CN789 cl284ct336cn789 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180947,gi339134
Length = 965
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 34 atgctgagaatcc 46
|||||||||||||
Sbjct: 784 atgctgagaatcc 796
>CL155CT192CN520 cl155ct192cn520 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181299,gi339237
Length = 1148
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 207 ggttggtgaagcg 219
|||||||||||||
Sbjct: 415 ggttggtgaagcg 403
>CL1455CT1559CN2355 cl1455ct1559cn2355 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs009aB03f.b,m
Length = 443
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 65 gcatgaggctgct 77
|||||||||||||
Sbjct: 140 gcatgaggctgct 152
>CL1264CT1367CN2157 cl1264ct1367cn2157 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns001aB05f.b,m
Length = 370
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 81 aaagctggtgctg 93
|||||||||||||
Sbjct: 195 aaagctggtgctg 183
>CL112CT145CN434 cl112ct145cn434 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181383,gi141811
Length = 1522
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 50 gcatgtcgatgag 62
|||||||||||||
Sbjct: 708 gcatgtcgatgag 720
>CL1118CT1221CN2008 cl1118ct1221cn2008 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm004dB04f.b,m
Length = 430
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 30 ttcgatgctgaga 42
|||||||||||||
Sbjct: 257 ttcgatgctgaga 245
>CL1056CT1157CN1943 cl1056ct1157cn1943 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm003aB07f.b,m
Length = 797
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 235 ggaacttgaacgc 247
|||||||||||||
Sbjct: 322 ggaacttgaacgc 310
>CL1044CT1145CN1928 cl1044ct1145cn1928 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm002cH01f.b,m
Length = 454
Score = 26.3 bits (13), Expect = 9.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 65 gcatgaggctgct 77
|||||||||||||
Sbjct: 383 gcatgaggctgct 371
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 371
Number of Sequences: 4717
Number of extensions: 371
Number of successful extensions: 110
Number of sequences better than 10.0: 30
length of query: 333
length of database: 2,543,711
effective HSP length: 15
effective length of query: 318
effective length of database: 2,472,956
effective search space: 786400008
effective search space used: 786400008
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)