BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_H03_O06ZT.seq
(513 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI3392304G gi3392304g LENGTH:883bp ; DIRECTION:0 ; CLONE: n/a ; ... 36 0.016
MGMY005DB03F.B mgmy005dB03f.b LENGTH:493bp ; DIRECTION:0 ; CLONE... 30 0.98
MGMY001CH11F.B mgmy001cH11f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 28 3.9
MGCS010BC03F.B mgcs010bC03f.b LENGTH:525bp ; DIRECTION:0 ; CLONE... 28 3.9
MGCM006DC08F.B mgcm006dC08f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 28 3.9
MGCM004DE05F.B mgcm004dE05f.b LENGTH:498bp ; DIRECTION:0 ; CLONE... 28 3.9
GI3391829G gi3391829g LENGTH:723bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.9
CL888CT987CN1762 cl888ct987cn1762 COVERAGE:0.98; CRAWID: 1; TOTA... 28 3.9
CL449CT519CN1171 cl449ct519cn1171 COVERAGE:1.0; CRAWID: 1; TOTAL... 28 3.9
CL283CT335CN787 cl283ct335cn787 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 3.9
CL1139CT1242CN2031 cl1139ct1242cn2031 COVERAGE:0.97; CRAWID: 1; ... 28 3.9
>GI3392304G gi3392304g LENGTH:883bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 883
Score = 36.2 bits (18), Expect = 0.016
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 gaaagagttcacaacctt 351
||||||||||||||||||
Sbjct: 22 gaaagagttcacaacctt 5
>MGMY005DB03F.B mgmy005dB03f.b LENGTH:493bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 493
Score = 30.2 bits (15), Expect = 0.98
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 tgtctcttggtctga 282
|||||||||||||||
Sbjct: 134 tgtctcttggtctga 148
>MGMY001CH11F.B mgmy001cH11f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 283 tgtagaagagattt 296
||||||||||||||
Sbjct: 403 tgtagaagagattt 390
>MGCS010BC03F.B mgcs010bC03f.b LENGTH:525bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 525
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 451 atagcatgcaaaga 464
||||||||||||||
Sbjct: 49 atagcatgcaaaga 62
>MGCM006DC08F.B mgcm006dC08f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 ggcacaacgccctc 222
||||||||||||||
Sbjct: 164 ggcacaacgccctc 177
>MGCM004DE05F.B mgcm004dE05f.b LENGTH:498bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 498
Score = 28.2 bits (14), Expect = 3.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 190 caccagagactaccagag 207
||||||||||||| ||||
Sbjct: 108 caccagagactacaagag 125
>GI3391829G gi3391829g LENGTH:723bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 723
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 tccagattcttctc 257
||||||||||||||
Sbjct: 50 tccagattcttctc 37
>CL888CT987CN1762 cl888ct987cn1762 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:50; ESTS:mgcm001aD02f.b,mg
Length = 1577
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 tttcacaccaaaaa 174
||||||||||||||
Sbjct: 636 tttcacaccaaaaa 649
>CL449CT519CN1171 cl449ct519cn1171 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180207; LENGTH:
Length = 769
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 ctcaaatacaccag 195
||||||||||||||
Sbjct: 433 ctcaaatacaccag 420
>CL283CT335CN787 cl283ct335cn787 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14180954,gi339154
Length = 1505
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 399 cagcccaagacctt 412
||||||||||||||
Sbjct: 465 cagcccaagacctt 478
>CL1139CT1242CN2031 cl1139ct1242cn2031 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm005bB09f.b,m
Length = 191
Score = 28.2 bits (14), Expect = 3.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 456 atgcaaagagatgt 469
||||||||||||||
Sbjct: 134 atgcaaagagatgt 147
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 525
Number of Sequences: 4717
Number of extensions: 525
Number of successful extensions: 145
Number of sequences better than 10.0: 11
length of query: 513
length of database: 2,543,711
effective HSP length: 15
effective length of query: 498
effective length of database: 2,472,956
effective search space: 1231532088
effective search space used: 1231532088
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)