TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_H03_O06ZT.seq
(513 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS007DB11F.B mgns007dB11f.b LENGTH:512bp ; DIRECTION:0 ; CLONE... 31 0.036
MGNS002CH03F.B mgns002cH03f.b LENGTH:319bp ; DIRECTION:0 ; CLONE... 30 0.069
MGCM007AA07F.B mgcm007aA07f.b LENGTH:480bp ; DIRECTION:0 ; CLONE... 29 0.13
CL1026CT1127CN1910 cl1026ct1127cn1910 COVERAGE:0.96; CRAWID: 1; ... 29 0.18
GI3391761G gi3391761g LENGTH:753bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 0.46
MGCS011AB01F.B mgcs011aB01f.b LENGTH:367bp ; DIRECTION:0 ; CLONE... 28 0.46
CL666CT749CN1517 cl666ct749cn1517 COVERAGE:0.99; CRAWID: 1; TOTA... 28 0.46
GI3392131G gi3392131g LENGTH:759bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 0.46
GI14180698 gi14180698 LENGTH:609bp ; DIRECTION:0 ; CLONE: n/a ; ... 27 0.64
CL966CT1066CN1847 cl966ct1066cn1847 COVERAGE:0.98; CRAWID: 1; TO... 27 0.87
GI14181002 gi14181002 LENGTH:678bp ; DIRECTION:0 ; CLONE: n/a ; ... 27 0.87
CL749CT837CN1610 cl749ct837cn1610 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.2
CL857CT953CN1728 cl857ct953cn1728 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.2
CL1183CT1286CN2075 cl1183ct1286cn2075 COVERAGE:0.99; CRAWID: 1; ... 26 1.6
GI14180924 gi14180924 LENGTH:668bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.6
CL1168CT1271CN2060 cl1168ct1271cn2060 COVERAGE:0.99; CRAWID: 1; ... 26 1.6
GI3391888G gi3391888g LENGTH:744bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.6
GI3391820G gi3391820g LENGTH:784bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.6
MGCM002AH07F.B mgcm002aH07f.b LENGTH:447bp ; DIRECTION:0 ; CLONE... 26 1.6
MGAP008DE10F.B mgap008dE10f.b LENGTH:473bp ; DIRECTION:0 ; CLONE... 25 2.3
MGCS003AE11F.B mgcs003aE11f.b LENGTH:531bp ; DIRECTION:0 ; CLONE... 25 2.3
MGCM007BA05F.B mgcm007bA05f.b LENGTH:560bp ; DIRECTION:0 ; CLONE... 25 3.1
GI3391875G gi3391875g LENGTH:752bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 3.1
CL1281CT1384CN2175 cl1281ct1384cn2175 COVERAGE:0.98; CRAWID: 1; ... 25 3.1
CL40CT63CN211 cl40ct63cn211 COVERAGE:0.98; CRAWID: 3; TOTAL_ESTS... 25 3.1
MGAP010DD02F.B mgap010dD02f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 25 3.1
MGNS011DC01F.B mgns011dC01f.b LENGTH:415bp ; DIRECTION:0 ; CLONE... 25 3.1
MGNS007BF04F.B mgns007bF04f.b LENGTH:458bp ; DIRECTION:0 ; CLONE... 25 3.1
MGCS010DH02F.B mgcs010dH02f.b LENGTH:174bp ; DIRECTION:0 ; CLONE... 25 3.1
MGNS009BE10F.B mgns009bE10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE... 25 3.1
CL126CT162CN465 cl126ct162cn465 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 3.1
GI14180753 gi14180753 LENGTH:940bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 4.3
CL1395CT1498CN2294 cl1395ct1498cn2294 COVERAGE:1.0; CRAWID: 1; T... 24 4.3
CL155CT192CN520 cl155ct192cn520 COVERAGE:0.95; CRAWID: 1; TOTAL_... 24 4.3
GI14180439 gi14180439 LENGTH:707bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 4.3
GI14180866 gi14180866 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 4.3
CL539CT613CN1339 cl539ct613cn1339 COVERAGE:1.0; CRAWID: 1; TOTAL... 24 5.9
CL151CT188CN513 cl151ct188cn513 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 5.9
CL914CT1013CN1792 cl914ct1013cn1792 COVERAGE:0.99; CRAWID: 1; TO... 24 5.9
MGCS006AG05F.B mgcs006aG05f.b LENGTH:557bp ; DIRECTION:0 ; CLONE... 24 5.9
MGCM008CE07F.B mgcm008cE07f.b LENGTH:483bp ; DIRECTION:0 ; CLONE... 24 5.9
CL1177CT1280CN2069 cl1177ct1280cn2069 COVERAGE:0.98; CRAWID: 1; ... 24 5.9
MGCM003BA09F.B mgcm003bA09f.b LENGTH:365bp ; DIRECTION:0 ; CLONE... 24 5.9
CL105CT138CN417 cl105ct138cn417 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 24 5.9
GI14180556 gi14180556 LENGTH:641bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.9
CL730CT815CN1588 cl730ct815cn1588 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.9
GI14180789 gi14180789 LENGTH:980bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.9
CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.9
MGNS009CC11F.B mgns009cC11f.b LENGTH:414bp ; DIRECTION:0 ; CLONE... 23 7.1
CL60CT86CN311 cl60ct86cn311 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 24 8.1
CL53CT78CN276 cl53ct78cn276 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS... 24 8.1
MGMY003DC10F.B mgmy003dC10f.b LENGTH:457bp ; DIRECTION:0 ; CLONE... 24 8.1
MGMY001DC01F.B mgmy001dC01f.b LENGTH:308bp ; DIRECTION:0 ; CLONE... 24 8.1
MGCS005DD11F.B mgcs005dD11f.b LENGTH:453bp ; DIRECTION:0 ; CLONE... 24 8.1
MGCS010AA02F.B mgcs010aA02f.b LENGTH:573bp ; DIRECTION:0 ; CLONE... 24 8.1
MGMY004AC03F.B mgmy004aC03f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 24 8.1
MGCM004AF01F.B mgcm004aF01f.b LENGTH:269bp ; DIRECTION:0 ; CLONE... 24 8.1
GI3391434G gi3391434g LENGTH:970bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 8.1
CL895CT994CN1772 cl895ct994cn1772 COVERAGE:0.99; CRAWID: 1; TOTA... 24 8.1
MGNS011AC02F.B mgns011aC02f.b LENGTH:378bp ; DIRECTION:0 ; CLONE... 24 8.1
CL40CT61CN203 cl40ct61cn203 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS... 24 8.1
MGCS006CA10F.B mgcs006cA10f.b LENGTH:486bp ; DIRECTION:0 ; CLONE... 24 8.1
MGCM004CF06F.B mgcm004cF06f.b LENGTH:388bp ; DIRECTION:0 ; CLONE... 24 8.1
MGCM001DB06F.B mgcm001dB06f.b LENGTH:442bp ; DIRECTION:0 ; CLONE... 24 8.1
CL1115CT1218CN2005 cl1115ct1218cn2005 COVERAGE:0.99; CRAWID: 1; ... 24 8.1
>MGNS007DB11F.B mgns007dB11f.b LENGTH:512bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 512
Score = 31.3 bits (62), Expect = 0.036
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +3
Query: 165 TPKTKNSNTPETTRVAQRPPG 227
TP+T+ S+ P T QRPPG
Sbjct: 198 TPRTRRSSAPSRTPSRQRPPG 260
>MGNS002CH03F.B mgns002cH03f.b LENGTH:319bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 319
Score = 30.4 bits (60), Expect = 0.069
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = -2 / +3
Query: 380 PGQESASKTQRL*TLSCSSFGVSTRHRRKSLLHQTKR 270
PG SAS+ +R+* +SC+S R S H ++R
Sbjct: 156 PGANSASEKRRI*PISCNSTSSRVVPPRLSACHASRR 266
>MGCM007AA07F.B mgcm007aA07f.b LENGTH:480bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 480
Score = 29.5 bits (58), Expect = 0.13
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1 / +2
Query: 283 CRRDFRLCLVLTPKDEQE 336
CRR FR +VLTPK+ E
Sbjct: 137 CRRRFRTSIVLTPKNPSE 190
>CL1026CT1127CN1910 cl1026ct1127cn1910 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm002bB04f.b,m
Length = 339
Score = 29.0 bits (57), Expect = 0.18
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = -3 / +1
Query: 394 ASCKPLVKSPRARPKGC 344
A C+P SPR+ PKGC
Sbjct: 118 AKCQPQDPSPRSPPKGC 168
>GI3391761G gi3391761g LENGTH:753bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 753
Score = 27.6 bits (54), Expect = 0.46
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3 / -2
Query: 376 VKSPRARPKGCELFLAHPLV*ARDTDG 296
V SPR RP+GCE L V A G
Sbjct: 128 VGSPRRRPRGCE*MLCKSYVPAPGAKG 48
>MGCS011AB01F.B mgcs011aB01f.b LENGTH:367bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 367
Score = 27.6 bits (54), Expect = 0.46
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2 / +2
Query: 281 QTKRQVRREKNLEAILTSTRRALCH 207
+T+++ R+++N + + TS RALCH
Sbjct: 182 ETRKRRRQKENGKHLQTSRDRALCH 256
>CL666CT749CN1517 cl666ct749cn1517 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgap007aE11f.b,mgn
Length = 486
Score = 27.6 bits (54), Expect = 0.46
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2 / +1
Query: 227 TRRALCHSGSLWCI*VLSFWCEKTHLA 147
TRR++C+SG+ *+ +C++ L+
Sbjct: 100 TRRSICNSGASGSF*ICCLYCQRQDLS 180
>GI3392131G gi3392131g LENGTH:759bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 759
Score = 27.6 bits (54), Expect = 0.46
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -3 / -3
Query: 241 LFSHPPGGRCATLVVSGVFEFLVF 170
LFS PPGG+ L+ G+ L F
Sbjct: 721 LFSPPPGGKSVRLLPWGIGRLLAF 650
>GI14180698 gi14180698 LENGTH:609bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 609
Score = 27.2 bits (53), Expect = 0.64
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3 / -2
Query: 424 RNSSKVLGCVASCKPLVKSPRARPKGCE 341
R +++++GC +C+ V S RP+ E
Sbjct: 563 RRATRLVGCALACRSSVLSSGRRPRRAE 480
>CL966CT1066CN1847 cl966ct1066cn1847 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001aG06f.b,mg
Length = 310
Score = 26.7 bits (52), Expect = 0.87
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +1 / +3
Query: 409 PWKSSFDLVLGLVYIACKE 465
PW S D+ L Y+ACK+
Sbjct: 237 PWPSIGDIALSRKYLACKK 293
>GI14181002 gi14181002 LENGTH:678bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 678
Score = 26.7 bits (52), Expect = 0.87
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3 / +3
Query: 162 FTPKTKNSNTPETTRVAQRPPGGCENSLQILLS 260
+TP T+ S +P +T A RPP SL + S
Sbjct: 243 WTPSTRLS*SPSSTTPAPRPPCPSTRSLSSIPS 341
>CL749CT837CN1610 cl749ct837cn1610 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgmy001bH02f.b,mgm
Length = 491
Score = 26.3 bits (51), Expect = 1.2
Identities = 9/21 (42%), Positives = 15/21 (70%)
Frame = +2 / -1
Query: 83 RVLQQRMSIPKTSESHHVPAN 145
RV ++ S+P+ + SHH PA+
Sbjct: 371 RVRIRKCSLPRAASSHHGPAS 309
>CL857CT953CN1728 cl857ct953cn1728 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgmy003bC06f.b,mgc
Length = 665
Score = 26.3 bits (51), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = +2 / -1
Query: 245 PDSSLAALVSWSDVEEISVCVSCSHQRMSKK 337
P+ ++ AL V IS C SCS KK
Sbjct: 380 PEFTMYALDMAPPVPSISSCASCSPTSWPKK 288
>CL1183CT1286CN2075 cl1183ct1286cn2075 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcm007aB01f.b,m
Length = 510
Score = 25.8 bits (50), Expect = 1.6
Identities = 8/23 (34%), Positives = 15/23 (64%)
Frame = +2 / +3
Query: 305 VSCSHQRMSKKEFTTFGSCSRTL 373
++ + + +S FTT+G CSR +
Sbjct: 201 IARTDEPLSSTRFTTYGGCSRLI 269
>GI14180924 gi14180924 LENGTH:668bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 668
Score = 25.8 bits (50), Expect = 1.6
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = +1 / -2
Query: 133 RSRKQAR*VFSHQKLRTQIHQRLPEWHNAL 222
R R++ R SH+ ++ +I R WH+A+
Sbjct: 553 RPRRRVRSGSSHESIQPRIXGRQRWWHSAI 464
>CL1168CT1271CN2060 cl1168ct1271cn2060 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm006aH08f.b,m
Length = 524
Score = 25.8 bits (50), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +1 / -3
Query: 163 SHQKLRTQIHQRLPEWH 213
SH+K +Q +RLP WH
Sbjct: 477 SHKKTPSQTLKRLPLWH 427
>GI3391888G gi3391888g LENGTH:744bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 744
Score = 25.8 bits (50), Expect = 1.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2 / +2
Query: 236 E*PPDSSLAALVSWSDVEEISVCVSCSHQRMSKKEFTTFGSCS 364
E P +S ++ SDV+ + + C+ SK T +G CS
Sbjct: 359 EDPIPTSDHPIIDGSDVDSLKKAILCNGVAXSKLIQTAWGFCS 487
>GI3391820G gi3391820g LENGTH:784bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 784
Score = 25.8 bits (50), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 508 SLLGLIKSSLFSHTSLCMLY 449
SLLGL++ SLFS C ++
Sbjct: 331 SLLGLVRLSLFSRLFFCDIW 390
>MGCM002AH07F.B mgcm002aH07f.b LENGTH:447bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 447
Score = 25.8 bits (50), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2 / +3
Query: 326 MSKKEFTTFGSCSRTLDQGF 385
+S+ E+ T GS RTL GF
Sbjct: 195 ISEAEWQTIGSHMRTLGYGF 254
>MGAP008DE10F.B mgap008dE10f.b LENGTH:473bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 473
Score = 25.3 bits (49), Expect = 2.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2 / +2
Query: 290 EISVCVSCSHQRMSKKEFTTFGSCSRT 370
E+ VCVS H+R S F + +T
Sbjct: 203 EVGVCVSLLHERCSASPIFFFSTSRQT 283
>MGCS003AE11F.B mgcs003aE11f.b LENGTH:531bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 531
Score = 25.3 bits (49), Expect = 2.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 83 RVLQQRMSIPKTSESHHVPANKL 151
R L R+S+P +SE H P L
Sbjct: 229 RSLSSRLSVPPSSEHPHKPPGTL 297
>MGCM007BA05F.B mgcm007bA05f.b LENGTH:560bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 560
Score = 24.9 bits (48), Expect = 3.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1 / +2
Query: 43 AKELMTTRTLPEFACTSAKDVNP*NVRISSRSR 141
AK TT + ACT + VN + +SSR R
Sbjct: 335 AKRQSTTPSSRPSACTMSSMVNTPSTTLSSRGR 433
>GI3391875G gi3391875g LENGTH:752bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 752
Score = 24.9 bits (48), Expect = 3.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2 / -1
Query: 506 LARFDQVEFIFPHISL 459
LARF Q F+ PH+ L
Sbjct: 743 LARFPQFGFVVPHLPL 696
>CL1281CT1384CN2175 cl1281ct1384cn2175 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:16; ESTS:mgns001cH01f.b,
Length = 1149
Score = 24.9 bits (48), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = +2 / +1
Query: 65 ERYPSLRVLQQRMSIPKTSESHHVPA 142
+R+PSLR L++ TS+S +P+
Sbjct: 661 KRWPSLRSLEEFQISGSTSQSRSLPS 738
>CL40CT63CN211 cl40ct63cn211 COVERAGE:0.98; CRAWID: 3;
TOTAL_ESTS:15; ESTS:gi14181519,gi1418138
Length = 1391
Score = 24.9 bits (48), Expect = 3.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3 / +3
Query: 340 LFLAHPLV*ARDTDGNLFYIRPRDKCGERRIWRLFSHP 227
L+L PL +R + +RP R WRL + P
Sbjct: 762 LWLPLPLATSRKSSWRSARLRPSVSASSLRSWRLLASP 875
>MGAP010DD02F.B mgap010dD02f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 24.9 bits (48), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2 / +1
Query: 473 PHISLHAI*TKPRTRSKELFQGLGLC 396
P HA+* +P TRS + L LC
Sbjct: 283 PPARTHAL*EQPHTRSTQEQTDLSLC 360
>MGNS011DC01F.B mgns011dC01f.b LENGTH:415bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 415
Score = 24.9 bits (48), Expect = 3.1
Identities = 11/38 (28%), Positives = 20/38 (51%)
Frame = +2 / +3
Query: 251 SSLAALVSWSDVEEISVCVSCSHQRMSKKEFTTFGSCS 364
S+LAA+ W+ ++S+C+ S T+F + S
Sbjct: 240 SALAAIQPWTWSPKVSMCLGTEDGSDSSNAETSFAASS 353
>MGNS007BF04F.B mgns007bF04f.b LENGTH:458bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 458
Score = 24.9 bits (48), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3 / +1
Query: 102 CQSLKRQNLITFPQTS*MSLFTPKTKNSNTPETTR 206
C S + T+P++S S T S+TP TTR
Sbjct: 253 CTSWWTSSSTTWPKSSITSSRPRSTTPSSTPSTTR 357
>MGCS010DH02F.B mgcs010dH02f.b LENGTH:174bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 174
Score = 24.9 bits (48), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -1 / -2
Query: 447 NQA*NKIKGTLPRSWAVS 394
NQA NK KGT+P ++S
Sbjct: 173 NQARNKKKGTIPHKQSLS 120
>MGNS009BE10F.B mgns009bE10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 327
Score = 24.9 bits (48), Expect = 3.1
Identities = 7/16 (43%), Positives = 10/16 (61%)
Frame = -2 / -3
Query: 179 LSFWCEKTHLACLRER 132
L WC++ + CLR R
Sbjct: 277 LGLWCQRARVVCLRCR 230
>CL126CT162CN465 cl126ct162cn465 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:32; ESTS:gi14181354,gi33920
Length = 882
Score = 23.5 bits (45), Expect(2) = 3.1
Identities = 6/14 (42%), Positives = 9/14 (63%)
Frame = -2 / -2
Query: 212 CHSGSLWCI*VLSF 171
CHS C+ +LS+
Sbjct: 758 CHSSPGGCVQLLSY 717
Score = 19.4 bits (36), Expect(2) = 3.1
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -3 / -1
Query: 358 RPKGCEL 338
RPKGC L
Sbjct: 864 RPKGCGL 844
>GI14180753 gi14180753 LENGTH:940bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 940
Score = 24.4 bits (47), Expect = 4.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1 / -1
Query: 411 RSWAVSLAVNPWSRVREQDPKVVNSFLLILW 319
+SWAV R +++ V+ FLL LW
Sbjct: 253 KSWAVPPDTTK*KRXQKRRVFVLGGFLLCLW 161
>CL1395CT1498CN2294 cl1395ct1498cn2294 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs003aA07f.b,mg
Length = 478
Score = 24.4 bits (47), Expect = 4.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3 / +1
Query: 415 SKVLGCVASCKPLVKSPRARPKGCE 341
S L CV S P +SP P+ E
Sbjct: 145 SPTLTCVTSSSPSSRSPMTLPRSSE 219
>CL155CT192CN520 cl155ct192cn520 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181299,gi339237
Length = 1148
Score = 24.4 bits (47), Expect = 4.3
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -1 / -1
Query: 414 PRSWAVSLAVNPWSRVREQDPKVVNSFLLILWC 316
PR+W + ++ W R Q V+ L +C
Sbjct: 1004 PRTWVLGVSETGWPRXSPQSSXNVSXXTLKRFC 906
>GI14180439 gi14180439 LENGTH:707bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 707
Score = 24.4 bits (47), Expect = 4.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 275 WSDVEEISVCVSCS 316
W++VE+ VC+ CS
Sbjct: 666 WTEVEQKIVCMGCS 707
>GI14180866 gi14180866 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 645
Score = 24.4 bits (47), Expect = 4.3
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -1 / +3
Query: 405 WAVSLAVNPWSRV 367
WA L + PWSRV
Sbjct: 399 WARCLGLRPWSRV 437
>CL539CT613CN1339 cl539ct613cn1339 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391793g,mgap007b
Length = 1212
Score = 24.0 bits (46), Expect = 5.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / -3
Query: 409 VLGCVASCKPLV 374
V+ C ASCKPLV
Sbjct: 892 VVKCDASCKPLV 857
>CL151CT188CN513 cl151ct188cn513 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi14181309,mgmy005b
Length = 1214
Score = 24.0 bits (46), Expect = 5.9
Identities = 10/28 (35%), Positives = 14/28 (49%)
Frame = -1 / +1
Query: 429 IKGTLPRSWAVSLAVNPWSRVREQDPKV 346
+ GT+P S + P + E DPKV
Sbjct: 874 VPGTVPASGGATTTEKPKTNPVEPDPKV 957
>CL914CT1013CN1792 cl914ct1013cn1792 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:19; ESTS:mgmy005bB08f.b,m
Length = 879
Score = 24.0 bits (46), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1 / +3
Query: 139 RKQAR*VFSHQKLRTQIHQR 198
R AR V HQ Q+HQR
Sbjct: 672 RSSARRVLEHQDPLQQVHQR 731
>MGCS006AG05F.B mgcs006aG05f.b LENGTH:557bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 557
Score = 24.0 bits (46), Expect = 5.9
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3 / +1
Query: 280 RPRDKCGERRIWRLFSHPP 224
R RD R+WR F H P
Sbjct: 154 RGRDHHPRVRLWRCFGHNP 210
>MGCM008CE07F.B mgcm008cE07f.b LENGTH:483bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 483
Score = 24.0 bits (46), Expect = 5.9
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2 / +1
Query: 26 SNTNTLRRNS*QRERYPSLRVLQQRMSIPKTSESHHVP 139
S+ LRR + Y +L + + M +P+T+++ ++P
Sbjct: 352 SHPQPLRRRYIEMRYYRTLGLCRGAMCLPQTAQAPNMP 465
>CL1177CT1280CN2069 cl1177ct1280cn2069 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm006cE10f.b,m
Length = 563
Score = 24.0 bits (46), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +2 / +2
Query: 323 RMSKKEFTTFGSCSRTLDQGFTASDTAQDLGRVPLILF 436
R S +EFTTF + FT++ + L P +LF
Sbjct: 74 RRSPREFTTFWLTLLPVCTPFTSTASLPILRSTPSLLF 187
>MGCM003BA09F.B mgcm003bA09f.b LENGTH:365bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 365
Score = 24.0 bits (46), Expect = 5.9
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -2 / +1
Query: 77 SGSVLVVMSSFAMY*CSKS 21
S S+ MSSFA+Y C+ S
Sbjct: 106 SWSIRRAMSSFALYNCASS 162
>CL105CT138CN417 cl105ct138cn417 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181393,gi3391423
Length = 1186
Score = 24.0 bits (46), Expect = 5.9
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = +3 / +3
Query: 438 RLGLYSMQRDVWENKLDLIKP 500
++G S+ +VW+N LDL P
Sbjct: 3 QMGQKSVSFNVWQNPLDLPYP 65
>GI14180556 gi14180556 LENGTH:641bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 641
Score = 24.0 bits (46), Expect = 5.9
Identities = 8/23 (34%), Positives = 13/23 (55%)
Frame = -3 / -3
Query: 457 MLYKPSLEQDQRNSSKVLGCVAS 389
++ +P L Q + + S V GC A
Sbjct: 198 LISRPQLSQLRFSCSGVAGCFAG 130
>CL730CT815CN1588 cl730ct815cn1588 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgmy001aF11f.b,mgm
Length = 741
Score = 24.0 bits (46), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +3 / +3
Query: 171 KTKNSNTPETTRVAQRPPGGCENSLQILL 257
+++ S+ PET RVA+ G L I L
Sbjct: 588 QSQESSVPETARVARGEVGHMHTDLSIHL 674
>GI14180789 gi14180789 LENGTH:980bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 980
Score = 24.0 bits (46), Expect = 5.9
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -3 / +3
Query: 442 SLEQDQRNSSKVLGCVAS 389
SL++DQR SS+ GC S
Sbjct: 366 SLQKDQRVSSESYGCKRS 419
>CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi2537249g,mgap008
Length = 2004
Score = 24.0 bits (46), Expect = 5.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 414 PRSWAVSLAVNPWSR 370
P SW+ V+PWSR
Sbjct: 1571 PTSWSPR*RVSPWSR 1615
>MGNS009CC11F.B mgns009cC11f.b LENGTH:414bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 414
Score = 22.6 bits (43), Expect(2) = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1 / +3
Query: 223 RVDVRIASRFFSRRTC 270
R R +SRF +RRTC
Sbjct: 126 RSRTRSSSRFAARRTC 173
Score = 19.8 bits (37), Expect(2) = 7.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +1 / +1
Query: 118 VRISSRSRKQAR*VFSHQKLRTQIHQRLP 204
V ++S + Q R S + ++H+ LP
Sbjct: 1 VDVNSIAASQHRQNASRSRRHQEVHRDLP 87
>CL60CT86CN311 cl60ct86cn311 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:gi14181475,gi14181081
Length = 1142
Score = 23.5 bits (45), Expect = 8.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3 / -2
Query: 247 WRLFSHPPGGRC 212
WR PPGG C
Sbjct: 649 WRCSGGPPGGTC 614
>CL53CT78CN276 cl53ct78cn276 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi14181495,gi3392240g
Length = 995
Score = 23.5 bits (45), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (57%)
Frame = -2 / -2
Query: 332 CSSFGVSTRHRRKSLLHQTKRQVR 261
C ++ S +HR +SLL T +R
Sbjct: 616 CPAYSWSAKHRCRSLLRATNSCLR 545
>MGMY003DC10F.B mgmy003dC10f.b LENGTH:457bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 457
Score = 23.5 bits (45), Expect = 8.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +2 / +1
Query: 311 CSHQRMSKKEFTTFGSCSRTLDQG 382
C+H + + ++ FGSC +G
Sbjct: 88 CAHLSVPRSDWEPFGSCGSLRGKG 159
>MGMY001DC01F.B mgmy001dC01f.b LENGTH:308bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 308
Score = 23.5 bits (45), Expect = 8.1
Identities = 7/16 (43%), Positives = 8/16 (49%)
Frame = -1 / +3
Query: 411 RSWAVSLAVNPWSRVR 364
R W S +PW R R
Sbjct: 258 RCWQASTGASPWRRAR 305
>MGCS005DD11F.B mgcs005dD11f.b LENGTH:453bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 453
Score = 23.5 bits (45), Expect = 8.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2 / +3
Query: 248 DSSLAALVSWSDVE 289
D + ALVSW D+E
Sbjct: 354 DDFIHALVSWFDIE 395
>MGCS010AA02F.B mgcs010aA02f.b LENGTH:573bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 573
Score = 23.5 bits (45), Expect = 8.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -1 / -3
Query: 321 WCEHETQTEISSTSDQETSAAREESGGYSHI 229
WC HE T I +TS + A H+
Sbjct: 298 WCSHEGPTPI*TTSHGNGTDAAGSPQAIGHL 206
>MGMY004AC03F.B mgmy004aC03f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 23.5 bits (45), Expect = 8.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2 / -3
Query: 305 VSCSHQRMSKKEFTTFGSCSRTL 373
+S SH R + F SC+R L
Sbjct: 248 LSSSHHRWGSQTFPRTASCTRVL 180
>MGCM004AF01F.B mgcm004aF01f.b LENGTH:269bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 269
Score = 23.5 bits (45), Expect = 8.1
Identities = 11/29 (37%), Positives = 12/29 (40%)
Frame = -2 / -2
Query: 296 KSLLHQTKRQVRREKNLEAILTSTRRALC 210
KS L + K LTSTR LC
Sbjct: 169 KSFLSECKLTGLHRNLSSLALTSTRARLC 83
>GI3391434G gi3391434g LENGTH:970bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 970
Score = 23.5 bits (45), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = +3 / +2
Query: 201 TRVAQRPPGGCENSLQILL 257
TRV PGG EN+ I+L
Sbjct: 377 TRVNDGQPGGHENTFLIIL 433
>CL895CT994CN1772 cl895ct994cn1772 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:24; ESTS:mgmy004aG05f.b,mg
Length = 1309
Score = 23.5 bits (45), Expect = 8.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2 / +1
Query: 212 TTPSGWM*E*PPDSSLAALVSWSDVEEISVCVSCSHQRMSKKEFTT 349
T+ W+ E P SSLAA + S C S S + S+ + T+
Sbjct: 1000 TSRETWVPESSPASSLAARPLHTTATHPSACWSTSLRLCSEPQSTS 1137
>MGNS011AC02F.B mgns011aC02f.b LENGTH:378bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 378
Score = 23.5 bits (45), Expect = 8.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1 / -1
Query: 474 PTHLFACYINQA*NKIKGTLPRSWAV 397
P H+ A Y+N+ ++ + P SW V
Sbjct: 111 PLHVPAQYLNKLLSRCRNV*PVSWRV 34
>CL40CT61CN203 cl40ct61cn203 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS:2;
ESTS:gi14180512,mgcs010aB0
Length = 1095
Score = 23.5 bits (45), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = -2 / -3
Query: 401 LCR*L*TPGQESASKTQRL*TLSCSSFGVSTR 306
+C+ + G + T R +L+CS FG+ R
Sbjct: 868 MCQPIRPTGYRHTAPTPRRVSLTCSGFGLLQR 773
>MGCS006CA10F.B mgcs006cA10f.b LENGTH:486bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 486
Score = 23.5 bits (45), Expect = 8.1
Identities = 13/42 (30%), Positives = 16/42 (37%)
Frame = +2 / +1
Query: 266 LVSWSDVEEISVCVSCSHQRMSKKEFTTFGSCSRTLDQGFTA 391
L+ D ++S C R SKK C R D G A
Sbjct: 352 LIGDEDQPDLSSKPRCQRCRKSKKGCDRHRPCGRCKDAGIPA 477
>MGCM004CF06F.B mgcm004cF06f.b LENGTH:388bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 388
Score = 23.5 bits (45), Expect = 8.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +3
Query: 31 VRNHDRTCP 5
+RNHDRT P
Sbjct: 267 IRNHDRTAP 293
>MGCM001DB06F.B mgcm001dB06f.b LENGTH:442bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 442
Score = 23.5 bits (45), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -3 / -3
Query: 217 RCATLVVSGVFEFLVFGVKRLI*LVCGN 134
R +V S VF F + RLI +VC N
Sbjct: 137 RSRCMVHSSVFRSFSFVIFRLIMVVCWN 54
>CL1115CT1218CN2005 cl1115ct1218cn2005 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgcm004cD09f.b,m
Length = 601
Score = 23.5 bits (45), Expect = 8.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1 / -2
Query: 379 GVYS*RHSPRPW 414
G *RH PRPW
Sbjct: 168 GQCR*RHQPRPW 133
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3424878
Number of Sequences: 4717
Number of extensions: 50076
Number of successful extensions: 1876
Number of sequences better than 10.0: 89
length of query: 171
length of database: 847,903
effective HSP length: 39
effective length of query: 131
effective length of database: 663,940
effective search space: 86976140
effective search space used: 86976140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 44 (23.1 bits)