BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1610_H11_O22ZT.seq
         (324 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGNS011BG09F.B mgns011bG09f.b LENGTH:354bp ; DIRECTION:0 ; CLONE...    28  2.4
CL118CT153CN454 cl118ct153cn454 COVERAGE:1.0; CRAWID: 1; TOTAL_E...    28  2.4
CL1025CT1126CN1909 cl1025ct1126cn1909 COVERAGE:0.98; CRAWID: 1; ...    28  2.4
GI3391641G gi3391641g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ; ...    26  9.5
GI14180418 gi14180418 LENGTH:696bp ; DIRECTION:0 ; CLONE: n/a ; ...    26  9.5
CL313CT367CN838 cl313ct367cn838 COVERAGE:0.99; CRAWID: 2; TOTAL_...    26  9.5
CL212CT252CN644 cl212ct252cn644 COVERAGE:0.99; CRAWID: 1; TOTAL_...    26  9.5
CL192CT232CN609 cl192ct232cn609 COVERAGE:0.98; CRAWID: 1; TOTAL_...    26  9.5
CL161CT198CN529 cl161ct198cn529 COVERAGE:1.0; CRAWID: 2; TOTAL_E...    26  9.5
CL1235CT1338CN2128 cl1235ct1338cn2128 COVERAGE:0.98; CRAWID: 1; ...    26  9.5

>MGNS011BG09F.B mgns011bG09f.b LENGTH:354bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 354

 Score = 28.2 bits (14), Expect = 2.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 38  acaaagagcataga 51
           ||||||||||||||
Sbjct: 137 acaaagagcataga 150



>CL118CT153CN454 cl118ct153cn454 COVERAGE:1.0; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:gi14181369,mgns012cG
          Length = 953

 Score = 28.2 bits (14), Expect = 2.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 277 cagtattccagatacgat 294
           ||||||||||||| ||||
Sbjct: 902 cagtattccagatccgat 919



>CL1025CT1126CN1909 cl1025ct1126cn1909 COVERAGE:0.98; CRAWID: 1;
           TOTAL_ESTS:15; ESTS:mgcm002bA10f.b,
          Length = 1328

 Score = 28.2 bits (14), Expect = 2.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 43  gagcatagaagatctgga 60
           |||||||||||| |||||
Sbjct: 870 gagcatagaagagctgga 887



>GI3391641G gi3391641g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ;
          CLONELIB: n/a ; TISSUE:[]
          Length = 805

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                       
Query: 18 cgcctgtgaaggc 30
          |||||||||||||
Sbjct: 28 cgcctgtgaaggc 40



>GI14180418 gi14180418 LENGTH:696bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 696

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 215 tgcagcaggagtt 227
           |||||||||||||
Sbjct: 371 tgcagcaggagtt 383



>CL313CT367CN838 cl313ct367cn838 COVERAGE:0.99; CRAWID: 2;
            TOTAL_ESTS:9; ESTS:gi3391400g,mgcm001a
          Length = 2030

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                         
Query: 7    gatcttggcgacg 19
            |||||||||||||
Sbjct: 1597 gatcttggcgacg 1585



>CL212CT252CN644 cl212ct252cn644 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:gi14181153,gi339165
          Length = 1061

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 56  ctggaaaccatga 68
           |||||||||||||
Sbjct: 118 ctggaaaccatga 130



>CL192CT232CN609 cl192ct232cn609 COVERAGE:0.98; CRAWID: 1;
          TOTAL_ESTS:3; ESTS:gi14181196,gi253724
          Length = 663

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                       
Query: 49 agaagatctggaa 61
          |||||||||||||
Sbjct: 57 agaagatctggaa 69



>CL161CT198CN529 cl161ct198cn529 COVERAGE:1.0; CRAWID: 2;
           TOTAL_ESTS:1; ESTS:gi3391549g; LENGTH:1
          Length = 1043

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 299 gatacaaataata 311
           |||||||||||||
Sbjct: 958 gatacaaataata 946



>CL1235CT1338CN2128 cl1235ct1338cn2128 COVERAGE:0.98; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgcm010dF05f.b,m
          Length = 537

 Score = 26.3 bits (13), Expect = 9.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 95  gtatcaatctatc 107
           |||||||||||||
Sbjct: 501 gtatcaatctatc 489



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259
Number of Sequences: 4717
Number of extensions: 259
Number of successful extensions: 65
Number of sequences better than 10.0: 10
length of query: 324
length of database: 2,543,711
effective HSP length: 15
effective length of query: 309
effective length of database: 2,472,956
effective search space: 764143404
effective search space used: 764143404
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)