BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_A03_B05ZT.seq
         (371 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GI14180601 gi14180601 LENGTH:717bp ; DIRECTION:0 ; CLONE: n/a ; ...    30  0.70
CL900CT999CN1778 cl900ct999cn1778 COVERAGE:0.99; CRAWID: 1; TOTA...    28  2.8
CL65CT92CN321 cl65ct92cn321 COVERAGE:0.97; CRAWID: 2; TOTAL_ESTS...    28  2.8
CL487CT561CN1247 cl487ct561cn1247 COVERAGE:1.0; CRAWID: 2; TOTAL...    28  2.8
CL40CT62CN210 cl40ct62cn210 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS...    28  2.8
CL40CT60CN196 cl40ct60cn196 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS...    28  2.8
CL40CT57CN172 cl40ct57cn172 COVERAGE:0.94; CRAWID: 1; TOTAL_ESTS...    28  2.8
CL40CT46CN156 cl40ct46cn156 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:...    28  2.8
CL115CT148CN439 cl115ct148cn439 COVERAGE:1.0; CRAWID: 2; TOTAL_E...    28  2.8

>GI14180601 gi14180601 LENGTH:717bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 717

 Score = 30.2 bits (15), Expect = 0.70
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 241 gcctttgccaaggaa 255
           |||||||||||||||
Sbjct: 612 gcctttgccaaggaa 626



>CL900CT999CN1778 cl900ct999cn1778 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:3; ESTS:mgmy004cG10f.b,mgm
          Length = 545

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 40  ctcaaccatcatac 53
           ||||||||||||||
Sbjct: 370 ctcaaccatcatac 383



>CL65CT92CN321 cl65ct92cn321 COVERAGE:0.97; CRAWID: 2; TOTAL_ESTS:9;
           ESTS:gi14181467,gi14180860
          Length = 883

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 304 tcgtcagaggcaaa 317
           ||||||||||||||
Sbjct: 486 tcgtcagaggcaaa 473



>CL487CT561CN1247 cl487ct561cn1247 COVERAGE:1.0; CRAWID: 2;
           TOTAL_ESTS:1; ESTS:gi3392108g; LENGTH:
          Length = 839

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 219 cttacccccgcaag 232
           ||||||||||||||
Sbjct: 617 cttacccccgcaag 630



>CL40CT62CN210 cl40ct62cn210 COVERAGE:0.98; CRAWID: 1;
           TOTAL_ESTS:129; ESTS:mgcm001aA07f.b,mgcm
          Length = 1353

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 240 ggcctttgccaagg 253
           ||||||||||||||
Sbjct: 369 ggcctttgccaagg 356



>CL40CT60CN196 cl40ct60cn196 COVERAGE:0.97; CRAWID: 1;
           TOTAL_ESTS:54; ESTS:gi14181245,gi1418085
          Length = 1670

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 240 ggcctttgccaagg 253
           ||||||||||||||
Sbjct: 336 ggcctttgccaagg 349



>CL40CT57CN172 cl40ct57cn172 COVERAGE:0.94; CRAWID: 1;
           TOTAL_ESTS:32; ESTS:mgcm001aF12f.b,mgcm0
          Length = 651

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 240 ggcctttgccaagg 253
           ||||||||||||||
Sbjct: 526 ggcctttgccaagg 513



>CL40CT46CN156 cl40ct46cn156 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;
           ESTS:mgcm002dB09f.b; LENGTH
          Length = 381

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 240 ggcctttgccaagg 253
           ||||||||||||||
Sbjct: 267 ggcctttgccaagg 254



>CL115CT148CN439 cl115ct148cn439 COVERAGE:1.0; CRAWID: 2;
           TOTAL_ESTS:1; ESTS:gi3392117g; LENGTH:7
          Length = 794

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 196 gcccaaaagattgt 209
           ||||||||||||||
Sbjct: 548 gcccaaaagattgt 561



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 453
Number of Sequences: 4717
Number of extensions: 453
Number of successful extensions: 121
Number of sequences better than 10.0: 9
length of query: 371
length of database: 2,543,711
effective HSP length: 15
effective length of query: 356
effective length of database: 2,472,956
effective search space: 880372336
effective search space used: 880372336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)