TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_A03_B05ZT.seq
(371 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI14181358 gi14181358 LENGTH:910bp ; DIRECTION:0 ; CLONE: n/a ; ... 31 0.033
MGCM008AB11F.B mgcm008aB11f.b LENGTH:482bp ; DIRECTION:0 ; CLONE... 29 0.087
CL1055CT1156CN1942 cl1055ct1156cn1942 COVERAGE:0.98; CRAWID: 1; ... 29 0.087
MGNS008AD05F.B mgns008aD05f.b LENGTH:244bp ; DIRECTION:0 ; CLONE... 29 0.087
CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1; TOTA... 29 0.12
MGNS011DC01F.B mgns011dC01f.b LENGTH:415bp ; DIRECTION:0 ; CLONE... 28 0.22
CL638CT716CN1480 cl638ct716cn1480 COVERAGE:0.99; CRAWID: 1; TOTA... 27 0.58
GI3391431G gi3391431g LENGTH:868bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 0.80
MGNS011CD05F.B mgns011cD05f.b LENGTH:436bp ; DIRECTION:0 ; CLONE... 26 1.1
MGNS007AG08F.B mgns007aG08f.b LENGTH:441bp ; DIRECTION:0 ; CLONE... 25 1.5
CL438CT508CN1150 cl438ct508cn1150 COVERAGE:0.98; CRAWID: 2; TOTA... 25 2.1
MGCS006DC02F.B mgcs006dC02f.b LENGTH:483bp ; DIRECTION:0 ; CLONE... 25 2.1
MGCM012CE01F.B mgcm012cE01f.b LENGTH:307bp ; DIRECTION:0 ; CLONE... 25 2.1
CL895CT994CN1772 cl895ct994cn1772 COVERAGE:0.99; CRAWID: 1; TOTA... 25 2.1
MGCS010BC05F.B mgcs010bC05f.b LENGTH:501bp ; DIRECTION:0 ; CLONE... 24 2.8
GI14180570 gi14180570 LENGTH:368bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 2.8
GI3391662G gi3391662g LENGTH:832bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 3.9
GI3392306G gi3392306g LENGTH:811bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 3.9
MGCS003AF02F.B mgcs003aF02f.b LENGTH:352bp ; DIRECTION:0 ; CLONE... 24 3.9
MGCM005AC03F.B mgcm005aC03f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 24 3.9
MGCS003AF04F.B mgcs003aF04f.b LENGTH:545bp ; DIRECTION:0 ; CLONE... 24 3.9
CL370CT434CN955 cl370ct434cn955 COVERAGE:0.97; CRAWID: 1; TOTAL_... 24 5.4
CL301CT354CN824 cl301ct354cn824 COVERAGE:0.97; CRAWID: 2; TOTAL_... 24 5.4
MGNS011AG12F.B mgns011aG12f.b LENGTH:362bp ; DIRECTION:0 ; CLONE... 24 5.4
MGCM001DF08F.B mgcm001dF08f.b LENGTH:330bp ; DIRECTION:0 ; CLONE... 24 5.4
CL1440CT1544CN2340 cl1440ct1544cn2340 COVERAGE:1.0; CRAWID: 1; T... 24 5.4
CL1229CT1332CN2122 cl1229ct1332cn2122 COVERAGE:1.0; CRAWID: 1; T... 24 5.4
GI3391717G gi3391717g LENGTH:1008bp ; DIRECTION:0 ; CLONE: n/a ;... 24 5.4
CL889CT988CN1766 cl889ct988cn1766 COVERAGE:0.98; CRAWID: 1; TOTA... 24 5.4
GI3391681G gi3391681g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.4
CL592CT667CN1416 cl592ct667cn1416 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.4
CL177CT214CN557 cl177ct214cn557 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 5.4
CL187CT226CN599 cl187ct226cn599 COVERAGE:0.99; CRAWID: 1; TOTAL_... 23 7.4
CL269CT320CN761 cl269ct320cn761 COVERAGE:0.98; CRAWID: 2; TOTAL_... 23 7.4
CL453CT523CN1179 cl453ct523cn1179 COVERAGE:0.99; CRAWID: 1; TOTA... 23 7.4
MGCS002DD02F.B mgcs002dD02f.b LENGTH:414bp ; DIRECTION:0 ; CLONE... 23 7.4
CL1004CT1105CN1888 cl1004ct1105cn1888 COVERAGE:0.98; CRAWID: 1; ... 23 7.4
MGCM004DE05F.B mgcm004dE05f.b LENGTH:498bp ; DIRECTION:0 ; CLONE... 23 7.4
GI3391927G gi3391927g LENGTH:815bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 7.4
GI14180339 gi14180339 LENGTH:853bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 7.4
MGCS008DB06F.B mgcs008dB06f.b LENGTH:467bp ; DIRECTION:0 ; CLONE... 23 7.4
CL363CT426CN945 cl363ct426cn945 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 23 7.4
CL804CT895CN1669 cl804ct895cn1669 COVERAGE:0.99; CRAWID: 1; TOTA... 23 7.4
MGCM008AE12F.B mgcm008aE12f.b LENGTH:390bp ; DIRECTION:0 ; CLONE... 23 7.4
CL1430CT1533CN2329 cl1430ct1533cn2329 COVERAGE:0.98; CRAWID: 1; ... 23 7.4
CL1405CT1508CN2304 cl1405ct1508cn2304 COVERAGE:0.99; CRAWID: 1; ... 23 7.4
GI14181273 gi14181273 LENGTH:659bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 7.4
MGCM012AH01F.B mgcm012aH01f.b LENGTH:357bp ; DIRECTION:0 ; CLONE... 23 7.4
MGMY005CC11F.B mgmy005cC11f.b LENGTH:403bp ; DIRECTION:0 ; CLONE... 23 7.4
CL365CT428CN948 cl365ct428cn948 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 23 7.4
>GI14181358 gi14181358 LENGTH:910bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 910
Score = 30.8 bits (61), Expect = 0.033
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1 / -1
Query: 40 LNHHTQH*IHYILQISCYHSYFIMP 114
L+H T +H L+ISC+H F +P
Sbjct: 184 LHHPTSKLLHTFLRISCWHRGFCLP 110
>MGCM008AB11F.B mgcm008aB11f.b LENGTH:482bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 482
Score = 29.5 bits (58), Expect = 0.087
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1 / +1
Query: 311 SDEIRVMNSTQHSMRRSRASLAKATPA 231
S +++V+ ST HS R SRASL + A
Sbjct: 208 SRKLQVVRSTSHSTRTSRASLMRLAVA 288
Score = 24.0 bits (46), Expect = 3.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2 / +2
Query: 352 RWSSLPPSVRSHLPL 308
RWS PP+VR + L
Sbjct: 221 RWSGQPPTVREQVEL 265
>CL1055CT1156CN1942 cl1055ct1156cn1942 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgcm003aB06f.b,m
Length = 607
Score = 29.5 bits (58), Expect = 0.087
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +1 / +2
Query: 133 YWQKYDNGTLCNEDLSLPEATAQK 204
+W NGTLC E L LP+ K
Sbjct: 497 FWNVTGNGTLCIEKLQLPDGFKPK 568
>MGNS008AD05F.B mgns008aD05f.b LENGTH:244bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 244
Score = 29.5 bits (58), Expect = 0.087
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1 / -3
Query: 40 LNHHTQH*IHYILQISCYHSYFIMPLPASTKY 135
L HH H +H++ SC+ S+ ++P+ A+ +
Sbjct: 218 LAHHLLHLLHHLGVHSCHGSHRVLPIRAAAAH 123
>CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi2537249g,mgap008
Length = 2004
Score = 29.0 bits (57), Expect = 0.12
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 4 RTSDLFSYCPFHLNH 48
R SD +S C FHL H
Sbjct: 525 RPSDCWSRCRFHLGH 569
>MGNS011DC01F.B mgns011dC01f.b LENGTH:415bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 415
Score = 28.1 bits (55), Expect = 0.22
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1 / +1
Query: 344 FFASFCEISFASDEIRVMNSTQHSMRRSRASLAKATPAC 228
FF F I EI ST+H M RSR S ++ +C
Sbjct: 58 FFFQFYLILLIYSEIFPRQSTRHRMLRSRKSHKLSSSSC 174
>CL638CT716CN1480 cl638ct716cn1480 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:gi2537297g,mgcm005
Length = 894
Score = 26.7 bits (52), Expect = 0.58
Identities = 11/29 (37%), Positives = 14/29 (47%)
Frame = +3 / -2
Query: 165 QRRLVAAGSYCPKDCVGNLTPASRRGLCQ 251
+RR ++C C G TP RRG Q
Sbjct: 644 RRRPCCRPAHCQTRCSGRTTPGCRRGCRQ 558
>GI3391431G gi3391431g LENGTH:868bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 868
Score = 26.3 bits (51), Expect = 0.80
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3 / -2
Query: 168 RRLVAAGSYCPKDCVGNLTPASR 236
RR AAGS CP G P SR
Sbjct: 225 RRRSAAGSQCPAPRRGRRAPGSR 157
>MGNS011CD05F.B mgns011cD05f.b LENGTH:436bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 436
Score = 25.8 bits (50), Expect = 1.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 86 LVITLISSCLCQHL 127
LV+TL+S CL H
Sbjct: 416 LVMTLVSGCLISHR 375
>MGNS007AG08F.B mgns007aG08f.b LENGTH:441bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 441
Score = 25.3 bits (49), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -1 / +2
Query: 239 TPACGGKISDTIFWAVASGSDKSSLHSV 156
TPA G +I+ +IF A+ + L SV
Sbjct: 251 TPAWGAEITISIFMALRTAIGSPFLTSV 334
>CL438CT508CN1150 cl438ct508cn1150 COVERAGE:0.98; CRAWID: 2;
TOTAL_ESTS:13; ESTS:gi14180126,mgap00
Length = 1418
Score = 24.9 bits (48), Expect = 2.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / +3
Query: 224 PRKQAWPLPRK 256
PR WP+PRK
Sbjct: 1332 PRMDVWPIPRK 1364
>MGCS006DC02F.B mgcs006dC02f.b LENGTH:483bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 483
Score = 24.9 bits (48), Expect = 2.1
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = +3 / +2
Query: 171 RLVAAGSYCPKD 206
RL+ +GSYCP D
Sbjct: 353 RLLYSGSYCPLD 388
>MGCM012CE01F.B mgcm012cE01f.b LENGTH:307bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 307
Score = 24.9 bits (48), Expect = 2.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3 / +2
Query: 249 QGSS*SPHRMLRRVHHPYL 305
+G PHR LRR H P L
Sbjct: 194 KGQRRRPHRQLRRAHVPGL 250
>CL895CT994CN1772 cl895ct994cn1772 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:24; ESTS:mgmy004aG05f.b,mg
Length = 1309
Score = 24.9 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2 / +1
Query: 370 WSCDRERWSSLPPSV 326
WSC R+ +LPP V
Sbjct: 706 WSCTGSRFKTLPPLV 750
>MGCS010BC05F.B mgcs010bC05f.b LENGTH:501bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 501
Score = 24.4 bits (47), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 247 QRPRLLAGVRFPTQS 203
+RPR L+G RFP S
Sbjct: 362 RRPRSLSGYRFPNPS 406
>GI14180570 gi14180570 LENGTH:368bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 368
Score = 24.4 bits (47), Expect = 2.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2 / -3
Query: 35 SISTIILNIEYTISFKYLVITLISSCLC 118
SISTI ++ ++++ + ++S C C
Sbjct: 96 SISTIRSSVAHSVAHSTITTIILSKCSC 13
>GI3391662G gi3391662g LENGTH:832bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 832
Score = 24.0 bits (46), Expect = 3.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -3 / -2
Query: 237 ACLRG*DFRHNL 202
AC++G DF+HN+
Sbjct: 822 ACIQGKDFQHNV 787
>GI3392306G gi3392306g LENGTH:811bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 811
Score = 24.0 bits (46), Expect = 3.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 86 LVITLISSCLCQHLPS 133
L+ + ISSC CQ PS
Sbjct: 44 LISSQISSCCCQSRPS 91
>MGCS003AF02F.B mgcs003aF02f.b LENGTH:352bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 352
Score = 24.0 bits (46), Expect = 3.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3 / -2
Query: 192 YCPKDCVGNLTPASR 236
+CPK+ GN+ P R
Sbjct: 174 FCPKNAEGNINPLLR 130
>MGCM005AC03F.B mgcm005aC03f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 24.0 bits (46), Expect = 3.9
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = -2 / -1
Query: 367 SCDRERWSSLPPSVRSHLPLTR 302
SC +S PP++ HLP T+
Sbjct: 133 SCKIVAFSDKPPTLALHLPQTK 68
>MGCS003AF04F.B mgcs003aF04f.b LENGTH:545bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 545
Score = 24.0 bits (46), Expect = 3.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / +1
Query: 184 AATSLRCTVCRYH 146
AAT RC++C+ H
Sbjct: 322 AATGARCSICQSH 360
>CL370CT434CN955 cl370ct434cn955 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180615,gi141806
Length = 865
Score = 23.5 bits (45), Expect = 5.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 283 RNIL*GDHELPWQRPRLLAG 224
R+ *G+ +PW++PR + G
Sbjct: 703 RSRK*GNSPIPWEKPRSI*G 762
>CL301CT354CN824 cl301ct354cn824 COVERAGE:0.97; CRAWID: 2;
TOTAL_ESTS:10; ESTS:gi3391636g,mgcm008
Length = 1081
Score = 23.5 bits (45), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (49%)
Frame = +1 / +3
Query: 94 HSYFIMPLPASTKYWQKYDNGTLCNEDLSLPE 189
HS ++PL ST + +CN+ L P+
Sbjct: 474 HSNLLLPLLISTSSTKTPTITVICNKTLQSPQ 569
>MGNS011AG12F.B mgns011aG12f.b LENGTH:362bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 362
Score = 23.5 bits (45), Expect = 5.4
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -3 / -1
Query: 132 LGRCWQRHDEIRV 94
L RCW+ HD I V
Sbjct: 140 LHRCWRPHDNIFV 102
>MGCM001DF08F.B mgcm001dF08f.b LENGTH:330bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 330
Score = 23.5 bits (45), Expect = 5.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1 / +3
Query: 344 FFASFCEISFASDEIRVMNST 282
FFASFC + ++ +ST
Sbjct: 96 FFASFCSLCSGQPKVSFFSST 158
>CL1440CT1544CN2340 cl1440ct1544cn2340 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs006cB10f.b,mg
Length = 268
Score = 23.5 bits (45), Expect = 5.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 12 RFILILSFPSQP 47
RFI IL FPS P
Sbjct: 118 RFIFILLFPSHP 153
>CL1229CT1332CN2122 cl1229ct1332cn2122 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm010cD11f.b,mg
Length = 359
Score = 23.5 bits (45), Expect = 5.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 221 YPRKQAWPLPR 253
+P + AWP PR
Sbjct: 265 WPNRSAWPRPR 297
>GI3391717G gi3391717g LENGTH:1008bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1008
Score = 23.5 bits (45), Expect = 5.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +1
Query: 154 GTLCNEDLSLP 186
GTLC ED +LP
Sbjct: 112 GTLCTEDSALP 144
>CL889CT988CN1766 cl889ct988cn1766 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy004aB09f.b,mgc
Length = 549
Score = 23.5 bits (45), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2 / -2
Query: 370 WSCDRERWSSLPPSVRSHLPLTR 302
W C + PP+ + LP TR
Sbjct: 467 WGCSTHMAPTRPPAKTASLPATR 399
>GI3391681G gi3391681g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 805
Score = 23.5 bits (45), Expect = 5.4
Identities = 10/36 (27%), Positives = 17/36 (46%)
Frame = +3 / -1
Query: 189 SYCPKDCVGNLTPASRRGLCQGSS*SPHRMLRRVHH 296
++C C T + + G + +PHR+L R H
Sbjct: 679 AFCHVSCTIEETSETMSLILTGMAXNPHRVLXRPGH 572
>CL592CT667CN1416 cl592ct667cn1416 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391656g,mgap010
Length = 848
Score = 23.5 bits (45), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3 / -2
Query: 183 AGSYCPKDCVGNLTPASRRGLCQGSS*SPH 272
A S+ K G + P RG +GSS S H
Sbjct: 826 APSFVKKWVQGYVPPQKXRGASKGSSTSKH 737
>CL177CT214CN557 cl177ct214cn557 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:10; ESTS:gi14181247,gi14181
Length = 1742
Score = 23.5 bits (45), Expect = 5.4
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -2 / +1
Query: 364 CDRERWSSLPPS 329
C ERWSSL P+
Sbjct: 589 CPSERWSSLIPT 624
>CL187CT226CN599 cl187ct226cn599 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181208,gi141809
Length = 1035
Score = 23.1 bits (44), Expect = 7.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 370 WSCDRERWSS 341
WSC+ +WSS
Sbjct: 555 WSCEAPQWSS 526
>CL269CT320CN761 cl269ct320cn761 COVERAGE:0.98; CRAWID: 2;
TOTAL_ESTS:21; ESTS:gi14180987,gi33919
Length = 1961
Score = 23.1 bits (44), Expect = 7.4
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 82 ISCYHSYFIMPLPASTKYWQK 144
+ C HS++ P +++WQ+
Sbjct: 1214 LPCQHSWWSARYPDRSQHWQR 1276
>CL453CT523CN1179 cl453ct523cn1179 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180132,mgap008
Length = 803
Score = 23.1 bits (44), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1 / -3
Query: 203 FWAVASGSDKSSLHSVPL 150
+WA G ++SLHS+ L
Sbjct: 279 WWAPLGGQKRTSLHSLHL 226
>MGCS002DD02F.B mgcs002dD02f.b LENGTH:414bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 414
Score = 23.1 bits (44), Expect = 7.4
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = -2 / -1
Query: 370 WSCDRERWSSLPPSVRSHLP 311
W C R RW RS P
Sbjct: 174 WPCRRRRWQPRGAKSRSRRP 115
>CL1004CT1105CN1888 cl1004ct1105cn1888 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm001dB07f.b,m
Length = 899
Score = 23.1 bits (44), Expect = 7.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / +1
Query: 352 RWSSLPPSVR 323
RWSS PP +R
Sbjct: 541 RWSSSPPRIR 570
>MGCM004DE05F.B mgcm004dE05f.b LENGTH:498bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 498
Score = 23.1 bits (44), Expect = 7.4
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2 / +3
Query: 224 PRKQAWPL 247
P KQ WPL
Sbjct: 243 PTKQRWPL 266
>GI3391927G gi3391927g LENGTH:815bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 815
Score = 23.1 bits (44), Expect = 7.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1 / +2
Query: 236 PACGGKISDTIFWAVASGSDKSSLHSVPLSYFCQY 132
PAC D + A S S + L+S Y C Y
Sbjct: 134 PACQTHYIDLLMHASDSWSSRQLLNSHRSRYRCHY 238
>GI14180339 gi14180339 LENGTH:853bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 853
Score = 23.1 bits (44), Expect = 7.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3 / -1
Query: 18 ILILSFPSQPSYSTLNTLYP 77
ILI+ P +Y TLN ++P
Sbjct: 643 ILIIYIPFPCNYVTLNEIHP 584
>MGCS008DB06F.B mgcs008dB06f.b LENGTH:467bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 467
Score = 23.1 bits (44), Expect = 7.4
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = -1 / -3
Query: 302 IRVMNSTQHSMRRSRASLAKATPACGGKISDTIFWA 195
+R + H +R L T ACG + WA
Sbjct: 423 VRTCSFVDHGQTVTRQKLESWTVACGKTWVGKVVWA 316
>CL363CT426CN945 cl363ct426cn945 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180667; LENGTH:7
Length = 761
Score = 23.1 bits (44), Expect = 7.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3 / +3
Query: 267 PHRMLRRVHHPYLVR 311
PH L R H P LVR
Sbjct: 132 PHACLLRPHRPRLVR 176
>CL804CT895CN1669 cl804ct895cn1669 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy002aF03f.b,mgm
Length = 473
Score = 23.1 bits (44), Expect = 7.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Frame = -3 / +2
Query: 213 RHNLLGSSFRQRQVFVAQCAVIILLPILGRC 121
R + S R ++ C + P+L RC
Sbjct: 182 RRQISYSPCRSHRLGSQDCCSVDCRPLLRRC 274
>MGCM008AE12F.B mgcm008aE12f.b LENGTH:390bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 390
Score = 23.1 bits (44), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (49%)
Frame = -3 / -3
Query: 243 GHACLRG*DFRHNLLGSSFRQRQVFVAQCA 154
GH CLRG R L SF + + VA A
Sbjct: 232 GHFCLRGRLARWTLAMRSFLRHMMRVALVA 143
>CL1430CT1533CN2329 cl1430ct1533cn2329 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs005bC07f.b,m
Length = 560
Score = 23.1 bits (44), Expect = 7.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / +2
Query: 145 YDNGTLCNEDLSLPE 189
YDNG LC L PE
Sbjct: 449 YDNGVLCISILHPPE 493
>CL1405CT1508CN2304 cl1405ct1508cn2304 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs003cB08f.b,m
Length = 565
Score = 23.1 bits (44), Expect = 7.4
Identities = 11/40 (27%), Positives = 14/40 (34%)
Frame = +2 / +1
Query: 131 SIGRSMITAHCATKTXXXXXXXXXXXXXXSYPRKQAWPLP 250
S S+ + CAT T S R +WP P
Sbjct: 286 STSLSLASTTCATTTSRMCDGSCRVIAACSSARPNSWPAP 405
>GI14181273 gi14181273 LENGTH:659bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 659
Score = 23.1 bits (44), Expect = 7.4
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = -2 / +1
Query: 265 DHELPWQRPRLLAGVRFP 212
D PW+ PR+ +G +P
Sbjct: 55 DGTCPWRWPRMASGTLWP 108
>MGCM012AH01F.B mgcm012aH01f.b LENGTH:357bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 357
Score = 23.1 bits (44), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1 / +2
Query: 287 STQHSMRRSRASLAKATPA 231
STQH+ R S + + +TPA
Sbjct: 53 STQHARRSSGPTTSTSTPA 109
>MGMY005CC11F.B mgmy005cC11f.b LENGTH:403bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 403
Score = 23.1 bits (44), Expect = 7.4
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1 / -1
Query: 115 LPASTKYWQKYDNGTLCNEDLSLPEATAQKIVSEILPPQA 234
L +T W K + GT S P T ++ LPP +
Sbjct: 367 LRTATTQWHKMEFGTFF*IHCSCPRETPNH*NADRLPPDS 248
>CL365CT428CN948 cl365ct428cn948 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180661; LENGTH:7
Length = 781
Score = 23.1 bits (44), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / +1
Query: 110 CLCQHLPSIGRSMITAH 160
C CQH P+I + +H
Sbjct: 379 CRCQHFPTIEPIEVLSH 429
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2225111
Number of Sequences: 4717
Number of extensions: 29748
Number of successful extensions: 1424
Number of sequences better than 10.0: 78
length of query: 123
length of database: 847,903
effective HSP length: 37
effective length of query: 86
effective length of database: 673,374
effective search space: 57910164
effective search space used: 57910164
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 43 (22.6 bits)