BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_A05_B09ZT.seq
(432 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI14180644 gi14180644 LENGTH:737bp ; DIRECTION:0 ; CLONE: n/a ; ... 34 0.053
MGCM004DB01F.B mgcm004dB01f.b LENGTH:439bp ; DIRECTION:0 ; CLONE... 32 0.21
MGCS006DF05F.B mgcs006dF05f.b LENGTH:541bp ; DIRECTION:0 ; CLONE... 30 0.82
MGCS002AB03F.B mgcs002aB03f.b LENGTH:406bp ; DIRECTION:0 ; CLONE... 30 0.82
GI14180355 gi14180355 LENGTH:715bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 0.82
MGNS001CC02F.B mgns001cC02f.b LENGTH:109bp ; DIRECTION:0 ; CLONE... 28 3.2
GI3392351G gi3392351g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.2
GI14180671 gi14180671 LENGTH:727bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.2
CL990CT1091CN1873 cl990ct1091cn1873 COVERAGE:0.99; CRAWID: 1; TO... 28 3.2
CL705CT789CN1559 cl705ct789cn1559 COVERAGE:0.97; CRAWID: 1; TOTA... 28 3.2
CL186CT224CN597 cl186ct224cn597 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 3.2
CL1444CT1548CN2344 cl1444ct1548cn2344 COVERAGE:0.99; CRAWID: 1; ... 28 3.2
CL1397CT1500CN2296 cl1397ct1500cn2296 COVERAGE:0.99; CRAWID: 1; ... 28 3.2
CL1148CT1251CN2040 cl1148ct1251cn2040 COVERAGE:0.99; CRAWID: 1; ... 28 3.2
>GI14180644 gi14180644 LENGTH:737bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 737
Score = 34.2 bits (17), Expect = 0.053
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 399 gctgttggaatgggcca 415
|||||||||||||||||
Sbjct: 516 gctgttggaatgggcca 532
>MGCM004DB01F.B mgcm004dB01f.b LENGTH:439bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 439
Score = 32.2 bits (16), Expect = 0.21
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 gccggccggcgccggg 88
||||||||||||||||
Sbjct: 341 gccggccggcgccggg 356
>MGCS006DF05F.B mgcs006dF05f.b LENGTH:541bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 541
Score = 30.2 bits (15), Expect = 0.82
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 299 acgacatgagcatgg 313
|||||||||||||||
Sbjct: 249 acgacatgagcatgg 263
>MGCS002AB03F.B mgcs002aB03f.b LENGTH:406bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 406
Score = 30.2 bits (15), Expect = 0.82
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 agcggctcaacaaaa 38
|||||||||||||||
Sbjct: 334 agcggctcaacaaaa 348
>GI14180355 gi14180355 LENGTH:715bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 715
Score = 30.2 bits (15), Expect = 0.82
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 35 aaaaatcaggcgctgtggt 53
|||||||||||| ||||||
Sbjct: 597 aaaaatcaggcgttgtggt 579
>MGNS001CC02F.B mgns001cC02f.b LENGTH:109bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 109
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 atatacagtggtgg 172
||||||||||||||
Sbjct: 51 atatacagtggtgg 38
>GI3392351G gi3392351g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 805
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 gttggcggctggaa 65
||||||||||||||
Sbjct: 164 gttggcggctggaa 151
>GI14180671 gi14180671 LENGTH:727bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 727
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccggcgccgggtt 90
||||||||||||||
Sbjct: 156 gccggcgccgggtt 143
>CL990CT1091CN1873 cl990ct1091cn1873 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcm001cB10f.b,mg
Length = 556
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 gggtacggggattg 144
||||||||||||||
Sbjct: 134 gggtacggggattg 121
>CL705CT789CN1559 cl705ct789cn1559 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgap008dH08f.b,mgc
Length = 711
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 409 tgggccaagaacat 422
||||||||||||||
Sbjct: 10 tgggccaagaacat 23
>CL186CT224CN597 cl186ct224cn597 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181212,mgmy003b
Length = 696
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 tggcggggacagcg 107
||||||||||||||
Sbjct: 405 tggcggggacagcg 392
>CL1444CT1548CN2344 cl1444ct1548cn2344 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs006dF11f.b,m
Length = 540
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 299 acgacatgagcatg 312
||||||||||||||
Sbjct: 487 acgacatgagcatg 474
>CL1397CT1500CN2296 cl1397ct1500cn2296 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcs003bA06f.b,m
Length = 596
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 407 aatgggccaagaac 420
||||||||||||||
Sbjct: 163 aatgggccaagaac 176
>CL1148CT1251CN2040 cl1148ct1251cn2040 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm005bH12f.b,m
Length = 552
Score = 28.2 bits (14), Expect = 3.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 300 cgacatgagcatgg 313
||||||||||||||
Sbjct: 373 cgacatgagcatgg 386
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553
Number of Sequences: 4717
Number of extensions: 553
Number of successful extensions: 153
Number of sequences better than 10.0: 14
length of query: 432
length of database: 2,543,711
effective HSP length: 15
effective length of query: 417
effective length of database: 2,472,956
effective search space: 1031222652
effective search space used: 1031222652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)