BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_B04_D07ZT.seq
         (397 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CL937CT1036CN1816 cl937ct1036cn1816 COVERAGE:0.98; CRAWID: 1; TO...    32  0.19
MGCS002BF06F.B mgcs002bF06f.b LENGTH:329bp ; DIRECTION:0 ; CLONE...    30  0.75
GI3391639G gi3391639g LENGTH:851bp ; DIRECTION:0 ; CLONE: n/a ; ...    30  0.75
GI14180874 gi14180874 LENGTH:651bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  3.0
CL65CT92CN321 cl65ct92cn321 COVERAGE:0.97; CRAWID: 2; TOTAL_ESTS...    28  3.0
CL448CT518CN1169 cl448ct518cn1169 COVERAGE:1.0; CRAWID: 2; TOTAL...    28  3.0
CL1400CT1503CN2299 cl1400ct1503cn2299 COVERAGE:0.97; CRAWID: 1; ...    28  3.0
CL1075CT1176CN1963 cl1075ct1176cn1963 COVERAGE:0.99; CRAWID: 1; ...    28  3.0

>CL937CT1036CN1816 cl937ct1036cn1816 COVERAGE:0.98; CRAWID: 1;
           TOTAL_ESTS:5; ESTS:mgmy006aD09f.b,mg
          Length = 519

 Score = 32.2 bits (16), Expect = 0.19
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 137 cgccgagaaggaggtg 152
           ||||||||||||||||
Sbjct: 382 cgccgagaaggaggtg 367



>MGCS002BF06F.B mgcs002bF06f.b LENGTH:329bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 329

 Score = 30.2 bits (15), Expect = 0.75
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 242 ggtggtgaagctgcc 256
           |||||||||||||||
Sbjct: 248 ggtggtgaagctgcc 234



>GI3391639G gi3391639g LENGTH:851bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 851

 Score = 30.2 bits (15), Expect = 0.75
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 41  cctctgaggactctg 55
           |||||||||||||||
Sbjct: 715 cctctgaggactctg 729



>GI14180874 gi14180874 LENGTH:651bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 651

 Score = 28.2 bits (14), Expect = 3.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 57  ctttgaattgaagg 70
           ||||||||||||||
Sbjct: 305 ctttgaattgaagg 292



>CL65CT92CN321 cl65ct92cn321 COVERAGE:0.97; CRAWID: 2; TOTAL_ESTS:9;
           ESTS:gi14181467,gi14180860
          Length = 883

 Score = 28.2 bits (14), Expect = 3.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 137 cgccgagaaggagg 150
           ||||||||||||||
Sbjct: 583 cgccgagaaggagg 596



>CL448CT518CN1169 cl448ct518cn1169 COVERAGE:1.0; CRAWID: 2;
           TOTAL_ESTS:1; ESTS:gi3392144g; LENGTH:
          Length = 776

 Score = 28.2 bits (14), Expect = 3.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 332 ggctttgtcgtcat 345
           ||||||||||||||
Sbjct: 84  ggctttgtcgtcat 97



>CL1400CT1503CN2299 cl1400ct1503cn2299 COVERAGE:0.97; CRAWID: 1;
           TOTAL_ESTS:3; ESTS:mgcs003bC08f.b,m
          Length = 528

 Score = 28.2 bits (14), Expect = 3.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 241 tggtggtgaagctg 254
           ||||||||||||||
Sbjct: 255 tggtggtgaagctg 242



>CL1075CT1176CN1963 cl1075ct1176cn1963 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgcm003cA06f.b,m
          Length = 430

 Score = 28.2 bits (14), Expect = 3.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 244 tggtgaagctgcca 257
           ||||||||||||||
Sbjct: 205 tggtgaagctgcca 218



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 504
Number of Sequences: 4717
Number of extensions: 504
Number of successful extensions: 144
Number of sequences better than 10.0: 9
length of query: 397
length of database: 2,543,711
effective HSP length: 15
effective length of query: 382
effective length of database: 2,472,956
effective search space: 944669192
effective search space used: 944669192
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)