BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_G03_N05ZT.seq
(458 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS006AB09F.B mgcs006aB09f.b LENGTH:469bp ; DIRECTION:0 ; CLONE... 32 0.22
CL98CT131CN409 cl98ct131cn409 COVERAGE:0.96; CRAWID: 1; TOTAL_ES... 30 0.87
CL1CT2CN2 cl1ct2cn2 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6; ESTS... 30 0.87
MGNS013AA03F.B mgns013aA03f.b LENGTH:335bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCS010DD07F.B mgcs010dD07f.b LENGTH:394bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCS002BF10F.B mgcs002bF10f.b LENGTH:360bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCM012CD11F.B mgcm012cD11f.b LENGTH:395bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCM004AA12F.B mgcm004aA12f.b LENGTH:268bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCM002AC06F.B mgcm002aC06f.b LENGTH:271bp ; DIRECTION:0 ; CLONE... 28 3.4
MGAP010CH12F.B mgap010cH12f.b LENGTH:482bp ; DIRECTION:0 ; CLONE... 28 3.4
GI3392343G gi3392343g LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
GI3392312G gi3392312g LENGTH:866bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
GI3391729G gi3391729g LENGTH:1117bp ; DIRECTION:0 ; CLONE: n/a ;... 28 3.4
GI14181242 gi14181242 LENGTH:663bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
GI14180655 gi14180655 LENGTH:1019bp ; DIRECTION:0 ; CLONE: n/a ;... 28 3.4
GI14180584 gi14180584 LENGTH:646bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
CL939CT1038CN1818 cl939ct1038cn1818 COVERAGE:0.99; CRAWID: 1; TO... 28 3.4
CL883CT982CN1757 cl883ct982cn1757 COVERAGE:0.98; CRAWID: 1; TOTA... 28 3.4
CL559CT633CN1369 cl559ct633cn1369 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.4
CL40CT61CN203 cl40ct61cn203 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS... 28 3.4
CL1435CT1539CN2335 cl1435ct1539cn2335 COVERAGE:0.99; CRAWID: 1; ... 28 3.4
CL1433CT1537CN2333 cl1433ct1537cn2333 COVERAGE:0.99; CRAWID: 1; ... 28 3.4
CL1396CT1499CN2295 cl1396ct1499cn2295 COVERAGE:1.0; CRAWID: 1; T... 28 3.4
CL1294CT1397CN2188 cl1294ct1397cn2188 COVERAGE:0.99; CRAWID: 1; ... 28 3.4
CL1043CT1144CN1927 cl1043ct1144cn1927 COVERAGE:0.98; CRAWID: 1; ... 28 3.4
>MGCS006AB09F.B mgcs006aB09f.b LENGTH:469bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 469
Score = 32.2 bits (16), Expect = 0.22
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 tccgcggcggcagcgg 234
||||||||||||||||
Sbjct: 22 tccgcggcggcagcgg 7
>CL98CT131CN409 cl98ct131cn409 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181406,gi3392197
Length = 883
Score = 30.2 bits (15), Expect = 0.87
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 ctggtcaaggagtct 286
|||||||||||||||
Sbjct: 458 ctggtcaaggagtct 472
>CL1CT2CN2 cl1ct2cn2 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:gi3391408g,mgcm005bG01f.b
Length = 1098
Score = 30.2 bits (15), Expect = 0.87
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 ccgcggcggcagcgg 234
|||||||||||||||
Sbjct: 313 ccgcggcggcagcgg 299
>MGNS013AA03F.B mgns013aA03f.b LENGTH:335bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 335
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 cactcagctctacc 68
||||||||||||||
Sbjct: 274 cactcagctctacc 287
>MGCS010DD07F.B mgcs010dD07f.b LENGTH:394bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 394
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 313 tgatgctgtcatca 326
||||||||||||||
Sbjct: 363 tgatgctgtcatca 376
>MGCS002BF10F.B mgcs002bF10f.b LENGTH:360bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 360
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 285 ctggagctctcggc 298
||||||||||||||
Sbjct: 36 ctggagctctcggc 49
>MGCM012CD11F.B mgcm012cD11f.b LENGTH:395bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 395
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 301 catcgacaccggtg 314
||||||||||||||
Sbjct: 48 catcgacaccggtg 61
>MGCM004AA12F.B mgcm004aA12f.b LENGTH:268bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 268
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 403 cgagaagctcgcca 416
||||||||||||||
Sbjct: 163 cgagaagctcgcca 176
>MGCM002AC06F.B mgcm002aC06f.b LENGTH:271bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 271
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 275 gtcaaggagtctgg 288
||||||||||||||
Sbjct: 213 gtcaaggagtctgg 226
>MGAP010CH12F.B mgap010cH12f.b LENGTH:482bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 482
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cggcggcagcggtg 236
||||||||||||||
Sbjct: 227 cggcggcagcggtg 240
>GI3392343G gi3392343g LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 840
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 ggtgtcgacggcgc 246
||||||||||||||
Sbjct: 184 ggtgtcgacggcgc 171
>GI3392312G gi3392312g LENGTH:866bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 866
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 313 tgatgctgtcatca 326
||||||||||||||
Sbjct: 595 tgatgctgtcatca 608
>GI3391729G gi3391729g LENGTH:1117bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1117
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 ggcggcagcggtgt 237
||||||||||||||
Sbjct: 369 ggcggcagcggtgt 356
>GI14181242 gi14181242 LENGTH:663bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 663
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 aggagacatcaccg 176
||||||||||||||
Sbjct: 426 aggagacatcaccg 439
>GI14180655 gi14180655 LENGTH:1019bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1019
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 ctactctcctgatg 131
||||||||||||||
Sbjct: 736 ctactctcctgatg 749
>GI14180584 gi14180584 LENGTH:646bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 646
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 cgagatccagattc 81
||||||||||||||
Sbjct: 467 cgagatccagattc 454
>CL939CT1038CN1818 cl939ct1038cn1818 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgmy006bF04f.b,mg
Length = 759
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 399 ctaacgagaagctc 412
||||||||||||||
Sbjct: 441 ctaacgagaagctc 454
>CL883CT982CN1757 cl883ct982cn1757 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgmy003dF04f.b,mgc
Length = 664
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 269 gacctggtcaagga 282
||||||||||||||
Sbjct: 497 gacctggtcaagga 510
>CL559CT633CN1369 cl559ct633cn1369 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391851g,mgcm001
Length = 764
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 catcagaagcatca 38
||||||||||||||
Sbjct: 423 catcagaagcatca 436
>CL40CT61CN203 cl40ct61cn203 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS:2;
ESTS:gi14180512,mgcs010aB0
Length = 1095
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 322 catcaccaagggat 335
||||||||||||||
Sbjct: 736 catcaccaagggat 749
>CL1435CT1539CN2335 cl1435ct1539cn2335 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs005dG10f.b,m
Length = 415
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 ggcagcggtgtcga 240
||||||||||||||
Sbjct: 161 ggcagcggtgtcga 148
>CL1433CT1537CN2333 cl1433ct1537cn2333 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs005dA05f.b,m
Length = 942
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 tattctctccgcga 95
||||||||||||||
Sbjct: 401 tattctctccgcga 414
>CL1396CT1499CN2295 cl1396ct1499cn2295 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs003aG04f.b,mg
Length = 620
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 cgagtattccaacg 106
||||||||||||||
Sbjct: 527 cgagtattccaacg 540
>CL1294CT1397CN2188 cl1294ct1397cn2188 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002aG08f.b,m
Length = 593
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 305 gacaccggtgatgc 318
||||||||||||||
Sbjct: 499 gacaccggtgatgc 512
>CL1043CT1144CN1927 cl1043ct1144cn1927 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm002cG02f.b,m
Length = 652
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 294 tcggccccatcgac 307
||||||||||||||
Sbjct: 265 tcggccccatcgac 278
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 641
Number of Sequences: 4717
Number of extensions: 641
Number of successful extensions: 191
Number of sequences better than 10.0: 25
length of query: 458
length of database: 2,543,711
effective HSP length: 15
effective length of query: 443
effective length of database: 2,472,956
effective search space: 1095519508
effective search space used: 1095519508
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)