BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_H11_P21ZT.seq
(499 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS011CA05F.B mgns011cA05f.b LENGTH:529bp ; DIRECTION:0 ; CLONE... 30 0.95
GI14180489 gi14180489 LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 0.95
MGCS011BA10F.B mgcs011bA10f.b LENGTH:383bp ; DIRECTION:0 ; CLONE... 28 3.8
GI14181418 gi14181418 LENGTH:671bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.8
CL963CT1063CN1844 cl963ct1063cn1844 COVERAGE:0.99; CRAWID: 1; TO... 28 3.8
CL863CT961CN1736 cl863ct961cn1736 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.8
CL461CT532CN1196 cl461ct532cn1196 COVERAGE:0.96; CRAWID: 1; TOTA... 28 3.8
CL343CT402CN884 cl343ct402cn884 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 3.8
CL335CT394CN876 cl335ct394cn876 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 3.8
CL291CT343CN798 cl291ct343cn798 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 3.8
CL258CT304CN727 cl258ct304cn727 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 3.8
CL150CT187CN512 cl150ct187cn512 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 3.8
>MGNS011CA05F.B mgns011cA05f.b LENGTH:529bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 529
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 ggcgaagaagatgct 98
|||||||||||||||
Sbjct: 83 ggcgaagaagatgct 97
>GI14180489 gi14180489 LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 857
Score = 30.2 bits (15), Expect = 0.95
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 446 aacttgaaattcata 460
|||||||||||||||
Sbjct: 131 aacttgaaattcata 117
>MGCS011BA10F.B mgcs011bA10f.b LENGTH:383bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 383
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 295 agctgcaatgccaa 308
||||||||||||||
Sbjct: 334 agctgcaatgccaa 347
>GI14181418 gi14181418 LENGTH:671bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 671
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 agtcgaggagggtc 190
||||||||||||||
Sbjct: 104 agtcgaggagggtc 117
>CL963CT1063CN1844 cl963ct1063cn1844 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001aE03f.b,mg
Length = 573
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 tcttgacggcgaag 90
||||||||||||||
Sbjct: 549 tcttgacggcgaag 536
>CL863CT961CN1736 cl863ct961cn1736 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgmy003bE06f.b,mgc
Length = 951
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 407 cctttgtttggatt 420
||||||||||||||
Sbjct: 919 cctttgtttggatt 932
>CL461CT532CN1196 cl461ct532cn1196 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi3392380g,mgcm001
Length = 914
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 gggacattggttgg 72
||||||||||||||
Sbjct: 365 gggacattggttgg 378
>CL343CT402CN884 cl343ct402cn884 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:15; ESTS:gi14180739,gi14180
Length = 1575
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 ccctccatgctgcc 244
||||||||||||||
Sbjct: 689 ccctccatgctgcc 676
>CL335CT394CN876 cl335ct394cn876 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14180769,mgap007a
Length = 1326
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 410 ttgtttggattcac 423
||||||||||||||
Sbjct: 99 ttgtttggattcac 86
>CL291CT343CN798 cl291ct343cn798 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180927,mgns007a
Length = 894
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 gagaaccagttctc 161
||||||||||||||
Sbjct: 818 gagaaccagttctc 831
>CL258CT304CN727 cl258ct304cn727 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181013,gi339146
Length = 945
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 475 catagtaatatata 488
||||||||||||||
Sbjct: 916 catagtaatatata 903
>CL150CT187CN512 cl150ct187cn512 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181312,gi339195
Length = 803
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 406 acctttgtttggat 419
||||||||||||||
Sbjct: 722 acctttgtttggat 709
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 584
Number of Sequences: 4717
Number of extensions: 584
Number of successful extensions: 151
Number of sequences better than 10.0: 13
length of query: 499
length of database: 2,543,711
effective HSP length: 15
effective length of query: 484
effective length of database: 2,472,956
effective search space: 1196910704
effective search space used: 1196910704
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)