TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1611_H11_P21ZT.seq
(499 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM005AC03F.B mgcm005aC03f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 29 0.24
CL207CT247CN633 cl207ct247cn633 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.45
CL448CT518CN1169 cl448ct518cn1169 COVERAGE:1.0; CRAWID: 2; TOTAL... 25 0.54
GI3392387G gi3392387g LENGTH:782bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.2
CL1201CT1304CN2093 cl1201ct1304cn2093 COVERAGE:1.0; CRAWID: 1; T... 26 1.2
CL1113CT1216CN2003 cl1113ct1216cn2003 COVERAGE:0.99; CRAWID: 1; ... 26 1.2
GI14180913 gi14180913 LENGTH:781bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.6
CL98CT131CN409 cl98ct131cn409 COVERAGE:0.96; CRAWID: 1; TOTAL_ES... 26 1.6
CL505CT579CN1283 cl505ct579cn1283 COVERAGE:0.99; CRAWID: 3; TOTA... 26 1.6
CL598CT675CN1425 cl598ct675cn1425 COVERAGE:0.99; CRAWID: 1; TOTA... 25 2.2
MGCM005DC01F.B mgcm005dC01f.b LENGTH:401bp ; DIRECTION:0 ; CLONE... 25 2.2
MGNS012CD01F.B mgns012cD01f.b LENGTH:406bp ; DIRECTION:0 ; CLONE... 25 2.2
MGMY002CH07F.B mgmy002cH07f.b LENGTH:448bp ; DIRECTION:0 ; CLONE... 25 2.2
MGCM007AH01F.B mgcm007aH01f.b LENGTH:533bp ; DIRECTION:0 ; CLONE... 25 2.2
MGAP007AC10F.B mgap007aC10f.b LENGTH:491bp ; DIRECTION:0 ; CLONE... 25 2.2
CL1162CT1265CN2054 cl1162ct1265cn2054 COVERAGE:0.98; CRAWID: 1; ... 25 2.2
GI3391673G gi3391673g LENGTH:803bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 3.0
MGCS008AD08F.B mgcs008aD08f.b LENGTH:272bp ; DIRECTION:0 ; CLONE... 25 3.0
CL222CT264CN662 cl222ct264cn662 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 25 3.0
GI14181387 gi14181387 LENGTH:817bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 3.0
CL141CT178CN497 cl141ct178cn497 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 4.1
MGCS009AE10F.B mgcs009aE10f.b LENGTH:532bp ; DIRECTION:0 ; CLONE... 24 4.1
CL680CT763CN1532 cl680ct763cn1532 COVERAGE:0.98; CRAWID: 1; TOTA... 24 4.1
CL1066CT1167CN1954 cl1066ct1167cn1954 COVERAGE:1.0; CRAWID: 1; T... 24 5.6
CL813CT904CN1678 cl813ct904cn1678 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.6
MGCM001DE11F.B mgcm001dE11f.b LENGTH:386bp ; DIRECTION:0 ; CLONE... 24 5.6
CL885CT984CN1759 cl885ct984cn1759 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.6
CL322CT376CN853 cl322ct376cn853 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 5.6
CL757CT846CN1619 cl757ct846cn1619 COVERAGE:0.99; CRAWID: 1; TOTA... 24 5.6
CL586CT661CN1409 cl586ct661cn1409 COVERAGE:1.0; CRAWID: 2; TOTAL... 24 5.6
CL131CT167CN474 cl131ct167cn474 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 5.6
MGCS009BC06F.B mgcs009bC06f.b LENGTH:482bp ; DIRECTION:0 ; CLONE... 24 5.6
CL965CT1065CN1846 cl965ct1065cn1846 COVERAGE:0.99; CRAWID: 1; TO... 24 5.6
MGMY001CB05F.B mgmy001cB05f.b LENGTH:434bp ; DIRECTION:0 ; CLONE... 24 5.6
MGCM006AG10F.B mgcm006aG10f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 24 7.8
GI14180133 gi14180133 LENGTH:830bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 7.8
CL1164CT1267CN2056 cl1164ct1267cn2056 COVERAGE:0.99; CRAWID: 1; ... 24 7.8
MGNS008DF10F.B mgns008dF10f.b LENGTH:369bp ; DIRECTION:0 ; CLONE... 24 7.8
GI14181386 gi14181386 LENGTH:668bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 7.8
MGCM001DF08F.B mgcm001dF08f.b LENGTH:330bp ; DIRECTION:0 ; CLONE... 24 7.8
>MGCM005AC03F.B mgcm005aC03f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 28.6 bits (56), Expect = 0.24
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1 / -1
Query: 346 PNSLGGPDSKIGTWHCSWFPITVACKS 266
P S+G D + +C W P+ AC+S
Sbjct: 217 PTSVGCIDHPSHSQYCFWDPVDTACRS 137
>CL207CT247CN633 cl207ct247cn633 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181161,mgmy001c
Length = 860
Score = 27.6 bits (54), Expect = 0.45
Identities = 14/46 (30%), Positives = 19/46 (40%)
Frame = +3 / -3
Query: 210 RHSVMFDPSMLPTTNHRSADLQATVMGNQLQCQVPILLSGPPSELG 347
+ SV+ P HRS + M + QC P +L P LG
Sbjct: 474 QRSVLRRPGWDQCLRHRSPAMVGWSMSSSRQCTCPTILDPSP*SLG 337
>CL448CT518CN1169 cl448ct518cn1169 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3392144g; LENGTH:
Length = 776
Score = 24.9 bits (48), Expect(2) = 0.54
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -2 / +3
Query: 489 IYITMSRCFDMNFKLMKNVQHRVNPNKGIGI 397
+Y+ M RC + F L+ PN G+
Sbjct: 453 LYLAMDRCTLLQFHLVDRPSDLATPNPNSGL 545
Score = 20.8 bits (39), Expect(2) = 0.54
Identities = 9/26 (34%), Positives = 12/26 (45%)
Frame = -2 / +3
Query: 420 NPNKGIGIPCWKFLLSERPSALPSIP 343
NPN G+G+ + LS P P
Sbjct: 528 NPNSGLGLEAFACPLSNLWGFKPFFP 605
>GI3392387G gi3392387g LENGTH:782bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 782
Score = 26.3 bits (51), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1 / -1
Query: 286 WGTSCNAKSQSYCRGHLASW 345
WG C A Q + +G LASW
Sbjct: 401 WGFPC*A*RQVHPKGRLASW 342
>CL1201CT1304CN2093 cl1201ct1304cn2093 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm008aG03f.b,mg
Length = 508
Score = 26.3 bits (51), Expect = 1.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1 / -2
Query: 355 PFYPNSLGGPDSKIGTWHC 299
PFYP G P IG W C
Sbjct: 504 PFYP**AG*PPPSIGDWCC 448
>CL1113CT1216CN2003 cl1113ct1216cn2003 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm004cB04f.b,m
Length = 366
Score = 26.3 bits (51), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +2 / -3
Query: 251 ESSISRLTGYSNGEPAAMPSPNLTVGAT*RVG 346
+ S++ + S+ PAAMP P L T RVG
Sbjct: 157 QGSLAVRSRASSSVPAAMPPPALMPNMTTRVG 62
>GI14180913 gi14180913 LENGTH:781bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 781
Score = 25.8 bits (50), Expect = 1.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3 / +3
Query: 66 WLDVLDGEEDAETAVDRFVREETEC 140
WL ++ E A +VDR V EC
Sbjct: 111 WLRIVSEETMASKSVDRLVPSHDEC 185
>CL98CT131CN409 cl98ct131cn409 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181406,gi3392197
Length = 883
Score = 25.8 bits (50), Expect = 1.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / +2
Query: 298 CNAKSQSYCRGHLAS 342
C + Q+YC GHL S
Sbjct: 368 CTPQYQAYCNGHLRS 412
>CL505CT579CN1283 cl505ct579cn1283 COVERAGE:0.99; CRAWID: 3;
TOTAL_ESTS:5; ESTS:gi3391592g,mgcs004
Length = 1021
Score = 25.8 bits (50), Expect = 1.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2 / +1
Query: 218 GNVRSLHAAHYESSISRLTGYSNGEPA 298
GN+ SLH H +++ TG ++ +PA
Sbjct: 55 GNITSLHHRHTDNTTRCRTGRASIQPA 135
>CL598CT675CN1425 cl598ct675cn1425 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391612g,mgcs005
Length = 1002
Score = 25.3 bits (49), Expect = 2.2
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = -2 / +2
Query: 276 PVSRLIDDS*WAAWRDRTLPSVVPSISILTLL 181
P S +DD +A +DR P PS++ L LL
Sbjct: 113 PPSSNLDDPHYAGSQDRIKPRGRPSLTSLDLL 208
>MGCM005DC01F.B mgcm005dC01f.b LENGTH:401bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 401
Score = 25.3 bits (49), Expect = 2.2
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +1 / -3
Query: 292 TSCNAKSQSYCRGHLASW 345
+SCN + CR H +SW
Sbjct: 207 SSCNPGPRGACRAHGSSW 154
>MGNS012CD01F.B mgns012cD01f.b LENGTH:406bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 406
Score = 25.3 bits (49), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3 / +1
Query: 135 ECAEGEPVLKD*LLSRGGSR 194
EC+ G VL+ LLSRG R
Sbjct: 202 ECSRGVGVLRGCLLSRGNRR 261
>MGMY002CH07F.B mgmy002cH07f.b LENGTH:448bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 448
Score = 25.3 bits (49), Expect = 2.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1 / +2
Query: 286 WGTSCNAKSQSYCRGHLASW 345
W TS +S S +GH SW
Sbjct: 233 WRTSPRRRSSSLSQGHSRSW 292
>MGCM007AH01F.B mgcm007aH01f.b LENGTH:533bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 533
Score = 25.3 bits (49), Expect = 2.2
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -2 / +3
Query: 399 IPCWKFLLSERPSALPSIPTR*VAPTVRL 313
IP W + ER ++PS P A T R+
Sbjct: 165 IPSWVWTAKERKKSIPSQPRHKQATTGRV 251
>MGAP007AC10F.B mgap007aC10f.b LENGTH:491bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 491
Score = 25.3 bits (49), Expect = 2.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1 / -3
Query: 307 WHCSWFPITVAC 272
W SWFP++ C
Sbjct: 372 WEASWFPVSGTC 337
>CL1162CT1265CN2054 cl1162ct1265cn2054 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcm006aD02f.b,m
Length = 477
Score = 25.3 bits (49), Expect = 2.2
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +1 / -3
Query: 298 CNAKSQSYCRGHL 336
C A S+CRGH+
Sbjct: 115 CRASGHSHCRGHI 77
>GI3391673G gi3391673g LENGTH:803bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 803
Score = 24.9 bits (48), Expect = 3.0
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = -1 / +3
Query: 247 VGSMEGSNITECRPKYFYLDPP 182
V +G+N T C P+ F PP
Sbjct: 144 VKPQKGNNSTSCDPRLFSPSPP 209
>MGCS008AD08F.B mgcs008aD08f.b LENGTH:272bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 272
Score = 24.9 bits (48), Expect = 3.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2 / -3
Query: 362 LGRSDNRNFQHGIPIPLF 415
L +SD QHG+ +PLF
Sbjct: 207 LNQSDTATPQHGVCLPLF 154
>CL222CT264CN662 cl222ct264cn662 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgcs005dF04f.b; LENG
Length = 388
Score = 24.9 bits (48), Expect = 3.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +2 / -3
Query: 251 ESSISRLTGYSNGEPAAMPSPNLT 322
+SS +R T Y +GEP + LT
Sbjct: 101 QSSGTRFTSYLDGEPDTLQMTVLT 30
>GI14181387 gi14181387 LENGTH:817bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 817
Score = 24.9 bits (48), Expect = 3.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3 / -2
Query: 170 LVFENWFSFSTFCFFTNESINCSLSIFFAVKNIQPMS 60
L F + FS S F S+NC S +KN+ +S
Sbjct: 309 LSFHSLFSVSLSSF*ETFSVNCHSSSVGPIKNMSLLS 199
>CL141CT178CN497 cl141ct178cn497 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181331,gi339218
Length = 1221
Score = 24.4 bits (47), Expect = 4.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2 / -2
Query: 362 LGRSDNRNFQHGIPIPLFGFTRCCTFFI 445
+G N G+P PL F C T+ +
Sbjct: 677 VGDVSGHNQSSGVPRPLGSFENCATWAV 594
>MGCS009AE10F.B mgcs009aE10f.b LENGTH:532bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 532
Score = 24.4 bits (47), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 150 LLQHILFLHERIDQLQSQHL 91
LLQ +L L ER+DQL+ L
Sbjct: 363 LLQKLLVLLERLDQLRLARL 304
>CL680CT763CN1532 cl680ct763cn1532 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgap007cA08f.b,mgm
Length = 667
Score = 24.4 bits (47), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2 / -2
Query: 417 PNKGIGIPCWKFLLSERPSAL 355
P + +G+P WK L+ R + L
Sbjct: 450 PREPLGVPVWKSFLNLRVTVL 388
>CL1066CT1167CN1954 cl1066ct1167cn1954 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm003bC02f.b,mg
Length = 733
Score = 24.0 bits (46), Expect = 5.6
Identities = 7/15 (46%), Positives = 9/15 (59%)
Frame = -2 / -1
Query: 423 VNPNKGIGIPCWKFL 379
+NP +G PCW L
Sbjct: 127 INPGIVVGHPCWALL 83
>CL813CT904CN1678 cl813ct904cn1678 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy002bB06f.b,mgm
Length = 564
Score = 24.0 bits (46), Expect = 5.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1 / +1
Query: 292 TSCNAKSQSYCRGHLASWDRRECAR 366
T C S CR L D R C R
Sbjct: 85 TGCTRSSHQLCRHGLGPCDTRICHR 159
>MGCM001DE11F.B mgcm001dE11f.b LENGTH:386bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 386
Score = 24.0 bits (46), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +2 / +2
Query: 161 QRLIAQSRRVKIEILGTTLGNVRS 232
+R I S+ K+ +L GNVRS
Sbjct: 104 ERGIKSSKMPKVYLLDYVAGNVRS 175
>CL885CT984CN1759 cl885ct984cn1759 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003dF09f.b,mgc
Length = 513
Score = 24.0 bits (46), Expect = 5.6
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = +2 / -2
Query: 344 GIEGSALGRSDNRNFQHG 397
G +G+ LGR + +F+HG
Sbjct: 443 GHKGAELGRREQVHFEHG 390
>CL322CT376CN853 cl322ct376cn853 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14180815,mgmy001b
Length = 814
Score = 24.0 bits (46), Expect = 5.6
Identities = 7/18 (38%), Positives = 10/18 (54%)
Frame = -1 / -1
Query: 340 SLGGPDSKIGTWHCSWFP 287
++G P S WHC+ P
Sbjct: 160 TIGSPTSPCWRWHCTTCP 107
>CL757CT846CN1619 cl757ct846cn1619 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgmy001cB10f.b,mgm
Length = 812
Score = 24.0 bits (46), Expect = 5.6
Identities = 11/43 (25%), Positives = 19/43 (43%)
Frame = -2 / -2
Query: 483 ITMSRCFDMNFKLMKNVQHRVNPNKGIGIPCWKFLLSERPSAL 355
I CF + M V NP+ + +P WK + P+++
Sbjct: 748 INFCYCFFYSQARMNGVSPF*NPSDRVPMPAWKS*STSEPASV 620
>CL586CT661CN1409 cl586ct661cn1409 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3391648g; LENGTH:
Length = 857
Score = 24.0 bits (46), Expect = 5.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 322 CRGHLASWDRRE 357
CR HLASW +++
Sbjct: 570 CRVHLASWKKKK 605
>CL131CT167CN474 cl131ct167cn474 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181344,gi339197
Length = 816
Score = 24.0 bits (46), Expect = 5.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -1 / -2
Query: 328 PDSKIGTWHCSWFPI 284
P TWHCS PI
Sbjct: 587 PSVVYSTWHCSVVPI 543
>MGCS009BC06F.B mgcs009bC06f.b LENGTH:482bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 482
Score = 24.0 bits (46), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 422 TRCCTFFINLKFISKHLLIVI 484
T CC F++ F+S L +I
Sbjct: 233 TACCCFYLTFFFLSSCFLCLI 295
>CL965CT1065CN1846 cl965ct1065cn1846 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001aF11f.b,mg
Length = 329
Score = 24.0 bits (46), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (62%)
Frame = -1 / -1
Query: 451 QVDEKCAASGESKQRYWNS 395
+VDE A +K+R+W +
Sbjct: 74 EVDENLAVCSHAKERHWRA 18
>MGMY001CB05F.B mgmy001cB05f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 434
Score = 24.0 bits (46), Expect = 5.6
Identities = 10/24 (41%), Positives = 12/24 (49%)
Frame = +3 / +1
Query: 171 LLSRGGSR*KYLGRHSVMFDPSML 242
L SR R SV FDP++L
Sbjct: 106 LFSRAKMNFPQYNRTSVAFDPALL 177
>MGCM006AG10F.B mgcm006aG10f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 23.5 bits (45), Expect = 7.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1 / +2
Query: 181 EEGQDRNTWDDTR*CSIPP 237
+ G +TW DT CS P
Sbjct: 14 DPGGGGSTWLDTSDCSNRP 70
>GI14180133 gi14180133 LENGTH:830bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 830
Score = 23.5 bits (45), Expect = 7.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1 / +3
Query: 229 IPPCCPLRIIDQP 267
+PPCCP + P
Sbjct: 69 VPPCCPFP*VPSP 107
>CL1164CT1267CN2056 cl1164ct1267cn2056 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm006aE10f.b,m
Length = 493
Score = 23.5 bits (45), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1 / -1
Query: 214 TR*CSIPPCCPLRI 255
T *C I CC +RI
Sbjct: 91 TS*CFISVCCDIRI 50
>MGNS008DF10F.B mgns008dF10f.b LENGTH:369bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 369
Score = 23.5 bits (45), Expect = 7.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1 / -3
Query: 244 GSMEGSNITECRPKYFYLD 188
G +EG + CR ++ LD
Sbjct: 61 GVVEGCPLCLCRTRFLQLD 5
>GI14181386 gi14181386 LENGTH:668bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 668
Score = 23.5 bits (45), Expect = 7.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1 / +1
Query: 376 IRTP*RTPFYPNSLGGPDSKIGTWH 302
+R RT S GPDSK T H
Sbjct: 1 VRGTGRTVPVRKSQKGPDSKTRTDH 75
>MGCM001DF08F.B mgcm001dF08f.b LENGTH:330bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 330
Score = 23.5 bits (45), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (52%)
Frame = +2 / +2
Query: 407 PLFGFTRCCTFFINLKFISKHLLIVIYMSS 496
PLF C F + L + ++ LL IY +S
Sbjct: 77 PLFS*FFLCFFLLPLLWATQSLLFFIYCTS 166
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3016155
Number of Sequences: 4717
Number of extensions: 42952
Number of successful extensions: 1656
Number of sequences better than 10.0: 55
length of query: 166
length of database: 847,903
effective HSP length: 39
effective length of query: 126
effective length of database: 663,940
effective search space: 83656440
effective search space used: 83656440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 44 (23.1 bits)