BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1612_B04_D08ZT.seq
         (394 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGAP007CD12F.B mgap007cD12f.b LENGTH:572bp ; DIRECTION:0 ; CLONE...    32  0.19
GI14180731 gi14180731 LENGTH:703bp ; DIRECTION:0 ; CLONE: n/a ; ...    32  0.19
MGCS010DD10F.B mgcs010dD10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE...    30  0.75
CL530CT604CN1325 cl530ct604cn1325 COVERAGE:1.0; CRAWID: 1; TOTAL...    30  0.75
CL1274CT1377CN2168 cl1274ct1377cn2168 COVERAGE:0.97; CRAWID: 1; ...    30  0.75
MGMY004DH01F.B mgmy004dH01f.b LENGTH:410bp ; DIRECTION:0 ; CLONE...    28  2.9
MGCM008BB05F.B mgcm008bB05f.b LENGTH:394bp ; DIRECTION:0 ; CLONE...    28  2.9
MGCM005AE05F.B mgcm005aE05f.b LENGTH:309bp ; DIRECTION:0 ; CLONE...    28  2.9
CL8CT10CN20 cl8ct10cn20 COVERAGE:0.99; CRAWID: 3; TOTAL_ESTS:11;...    28  2.9

>MGAP007CD12F.B mgap007cD12f.b LENGTH:572bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 572

 Score = 32.2 bits (16), Expect = 0.19
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 256 agcattgatttgatgg 271
           ||||||||||||||||
Sbjct: 32  agcattgatttgatgg 47



>GI14180731 gi14180731 LENGTH:703bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 703

 Score = 32.2 bits (16), Expect = 0.19
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 2   cgacgaagacgacgaa 17
           ||||||||||||||||
Sbjct: 465 cgacgaagacgacgaa 450



>MGCS010DD10F.B mgcs010dD10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 327

 Score = 30.2 bits (15), Expect = 0.75
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 323 atggcatcgggtaac 337
           |||||||||||||||
Sbjct: 286 atggcatcgggtaac 272



>CL530CT604CN1325 cl530ct604cn1325 COVERAGE:1.0; CRAWID: 1;
           TOTAL_ESTS:1; ESTS:gi3391978g; LENGTH:
          Length = 822

 Score = 30.2 bits (15), Expect = 0.75
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 343 cgtgacttgattgac 357
           |||||||||||||||
Sbjct: 699 cgtgacttgattgac 713



>CL1274CT1377CN2168 cl1274ct1377cn2168 COVERAGE:0.97; CRAWID: 1;
           TOTAL_ESTS:3; ESTS:mgns001bG01f.b,m
          Length = 563

 Score = 30.2 bits (15), Expect = 0.75
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 79  agtcgcctatggact 93
           |||||||||||||||
Sbjct: 311 agtcgcctatggact 325



>MGMY004DH01F.B mgmy004dH01f.b LENGTH:410bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 410

 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 73  atatcaagtcgcct 86
           ||||||||||||||
Sbjct: 122 atatcaagtcgcct 135



>MGCM008BB05F.B mgcm008bB05f.b LENGTH:394bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 394

 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 115 aactgggactccgt 128
           ||||||||||||||
Sbjct: 158 aactgggactccgt 145



>MGCM005AE05F.B mgcm005aE05f.b LENGTH:309bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 309

 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 55  ctgcacccgttgcg 68
           ||||||||||||||
Sbjct: 250 ctgcacccgttgcg 263



>CL8CT10CN20 cl8ct10cn20 COVERAGE:0.99; CRAWID: 3; TOTAL_ESTS:11;
           ESTS:gi3392392g,mgcs003bH02
          Length = 1230

 Score = 28.2 bits (14), Expect = 2.9
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 2   cgacgaagacgacgaatc 19
           |||||| |||||||||||
Sbjct: 726 cgacgacgacgacgaatc 709



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 439
Number of Sequences: 4717
Number of extensions: 439
Number of successful extensions: 108
Number of sequences better than 10.0: 9
length of query: 394
length of database: 2,543,711
effective HSP length: 15
effective length of query: 379
effective length of database: 2,472,956
effective search space: 937250324
effective search space used: 937250324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)