BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1612_B08_D16ZT.seq
(477 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS011CE12F.B mgcs011cE12f.b LENGTH:196bp ; DIRECTION:0 ; CLONE... 28 3.6
MGCS004CB08F.B mgcs004cB08f.b LENGTH:508bp ; DIRECTION:0 ; CLONE... 28 3.6
MGCM009DA11F.B mgcm009dA11f.b LENGTH:292bp ; DIRECTION:0 ; CLONE... 28 3.6
MGAP007BA12F.B mgap007bA12f.b LENGTH:448bp ; DIRECTION:0 ; CLONE... 28 3.6
GI14180977 gi14180977 LENGTH:680bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.6
GI14180843 gi14180843 LENGTH:724bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.6
CL1307CT1410CN2201 cl1307ct1410cn2201 COVERAGE:0.99; CRAWID: 1; ... 28 3.6
>MGCS011CE12F.B mgcs011cE12f.b LENGTH:196bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 196
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 gacttgtttcaaag 249
||||||||||||||
Sbjct: 131 gacttgtttcaaag 144
>MGCS004CB08F.B mgcs004cB08f.b LENGTH:508bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 508
Score = 28.2 bits (14), Expect = 3.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 218 aagacaattgtggtcttg 235
|||| |||||||||||||
Sbjct: 108 aagataattgtggtcttg 91
>MGCM009DA11F.B mgcm009dA11f.b LENGTH:292bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 292
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 gtcgcgtctacgcc 56
||||||||||||||
Sbjct: 173 gtcgcgtctacgcc 186
>MGAP007BA12F.B mgap007bA12f.b LENGTH:448bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 448
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 448 tggtatcataaaat 461
||||||||||||||
Sbjct: 83 tggtatcataaaat 96
>GI14180977 gi14180977 LENGTH:680bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 680
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 attgtggtcttgga 237
||||||||||||||
Sbjct: 59 attgtggtcttgga 72
>GI14180843 gi14180843 LENGTH:724bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 724
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 actactcgagccag 169
||||||||||||||
Sbjct: 495 actactcgagccag 508
>CL1307CT1410CN2201 cl1307ct1410cn2201 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002cD04f.b,m
Length = 561
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 266 gtcaatggacaggg 279
||||||||||||||
Sbjct: 464 gtcaatggacaggg 451
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 485
Number of Sequences: 4717
Number of extensions: 485
Number of successful extensions: 113
Number of sequences better than 10.0: 7
length of query: 477
length of database: 2,543,711
effective HSP length: 15
effective length of query: 462
effective length of database: 2,472,956
effective search space: 1142505672
effective search space used: 1142505672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)