TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1612_B08_D16ZT.seq
(477 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL1138CT1241CN2030 cl1138ct1241cn2030 COVERAGE:0.99; CRAWID: 1; ... 28 0.31
MGNS002CE08F.B mgns002cE08f.b LENGTH:326bp ; DIRECTION:0 ; CLONE... 28 0.42
GI14180710 gi14180710 LENGTH:652bp ; DIRECTION:0 ; CLONE: n/a ; ... 27 0.79
MGNS011AH11F.B mgns011aH11f.b LENGTH:451bp ; DIRECTION:0 ; CLONE... 27 0.79
CL763CT852CN1626 cl763ct852cn1626 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.1
CL732CT817CN1590 cl732ct817cn1590 COVERAGE:0.98; CRAWID: 1; TOTA... 26 1.1
GI14180436 gi14180436 LENGTH:763bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.5
CL40CT56CN169 cl40ct56cn169 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 26 1.5
CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.5
CL480CT552CN1232 cl480ct552cn1232 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.5
CL1438CT1542CN2338 cl1438ct1542cn2338 COVERAGE:0.99; CRAWID: 1; ... 25 2.1
CL326CT381CN858 cl326ct381cn858 COVERAGE:0.98; CRAWID: 1; TOTAL_... 25 2.1
CL278CT329CN778 cl278ct329cn778 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 25 2.1
CL49CT72CN261 cl49ct72cn261 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:... 25 2.1
CL89CT122CN393 cl89ct122cn393 COVERAGE:0.96; CRAWID: 1; TOTAL_ES... 22 2.8
MGCM009AA10F.B mgcm009aA10f.b LENGTH:332bp ; DIRECTION:0 ; CLONE... 25 2.8
CL278CT330CN779 cl278ct330cn779 COVERAGE:0.98; CRAWID: 1; TOTAL_... 25 2.8
GI14180594 gi14180594 LENGTH:627bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 2.8
MGCM002BF09F.B mgcm002bF09f.b LENGTH:252bp ; DIRECTION:0 ; CLONE... 25 2.8
CL526CT600CN1320 cl526ct600cn1320 COVERAGE:0.98; CRAWID: 1; TOTA... 24 3.9
CL362CT425CN944 cl362ct425cn944 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 24 3.9
CL1281CT1384CN2175 cl1281ct1384cn2175 COVERAGE:0.98; CRAWID: 1; ... 24 3.9
CL946CT1045CN1825 cl946ct1045cn1825 COVERAGE:0.99; CRAWID: 1; TO... 24 3.9
MGAP007BE07F.B mgap007bE07f.b LENGTH:506bp ; DIRECTION:0 ; CLONE... 24 3.9
MGNS012CA12F.B mgns012cA12f.b LENGTH:380bp ; DIRECTION:0 ; CLONE... 24 3.9
GI3391625G gi3391625g LENGTH:1010bp ; DIRECTION:0 ; CLONE: n/a ;... 24 3.9
CL845CT941CN1716 cl845ct941cn1716 COVERAGE:0.99; CRAWID: 1; TOTA... 24 3.9
GI14180601 gi14180601 LENGTH:717bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.3
CL567CT641CN1378 cl567ct641cn1378 COVERAGE:0.98; CRAWID: 1; TOTA... 24 5.3
GI14181215 gi14181215 LENGTH:660bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.3
MGCS010AA02F.B mgcs010aA02f.b LENGTH:573bp ; DIRECTION:0 ; CLONE... 24 5.3
MGCM001DD07F.B mgcm001dD07f.b LENGTH:296bp ; DIRECTION:0 ; CLONE... 24 5.3
MGNS010BH07F.B mgns010bH07f.b LENGTH:551bp ; DIRECTION:0 ; CLONE... 24 5.3
CL90CT123CN394 cl90ct123cn394 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 24 5.3
MGCS010AA01F.B mgcs010aA01f.b LENGTH:428bp ; DIRECTION:0 ; CLONE... 24 5.3
CL937CT1036CN1816 cl937ct1036cn1816 COVERAGE:0.98; CRAWID: 1; TO... 24 5.3
MGCS005AF02F.B mgcs005aF02f.b LENGTH:456bp ; DIRECTION:0 ; CLONE... 24 5.3
GI14180618 gi14180618 LENGTH:657bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 7.3
CL1096CT1199CN1986 cl1096ct1199cn1986 COVERAGE:0.99; CRAWID: 1; ... 24 7.3
GI3392296G gi3392296g LENGTH:823bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 7.3
CL696CT779CN1549 cl696ct779cn1549 COVERAGE:1.0; CRAWID: 1; TOTAL... 24 7.3
CL201CT241CN621 cl201ct241cn621 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.3
CL138CT175CN490 cl138ct175cn490 COVERAGE:0.96; CRAWID: 2; TOTAL_... 24 7.3
CL378CT442CN965 cl378ct442cn965 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.3
MGCM010CF12F.B mgcm010cF12f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 24 7.3
CL1346CT1449CN2241 cl1346ct1449cn2241 COVERAGE:0.99; CRAWID: 1; ... 24 7.3
MGCS009BC06F.B mgcs009bC06f.b LENGTH:482bp ; DIRECTION:0 ; CLONE... 24 7.3
MGCS005BB09F.B mgcs005bB09f.b LENGTH:437bp ; DIRECTION:0 ; CLONE... 24 7.3
MGCS010DG04F.B mgcs010dG04f.b LENGTH:299bp ; DIRECTION:0 ; CLONE... 24 7.3
>CL1138CT1241CN2030 cl1138ct1241cn2030 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm005bB04f.b,m
Length = 361
Score = 28.1 bits (55), Expect = 0.31
Identities = 13/42 (30%), Positives = 18/42 (41%)
Frame = +1 / +1
Query: 22 SAWACP*VASTPSTGPETSTCIALKVTERICFCRFRDLETRT 147
+AWACP S + P ++TC + C R RT
Sbjct: 109 AAWACPPPRSGSA*SPRSATCTRTPRSRPCCCARASRPSART 234
>MGNS002CE08F.B mgns002cE08f.b LENGTH:326bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 326
Score = 27.6 bits (54), Expect = 0.42
Identities = 17/56 (30%), Positives = 21/56 (37%)
Frame = +1 / +3
Query: 7 RPICGSAWACP*VASTPSTGPETSTCIALKVTERICFCRFRDLETRTSN*LLEPAW 174
R C WA P + TPST TS I+ + + C SN L W
Sbjct: 132 RTCCFCLWAAPLMVPTPSTRSLTSATISRVSSCSVLTCTTSPRSPSRSNVLSF*VW 299
>GI14180710 gi14180710 LENGTH:652bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 652
Score = 26.7 bits (52), Expect = 0.79
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = -3 / +1
Query: 91 RLCKSRFPAQYSA*TRLKGRPMPSRR 14
++C+SR+ ++ *TR + RP P+ R
Sbjct: 487 QVCQSRWAMRWLL*TRGESRPSPNNR 564
>MGNS011AH11F.B mgns011aH11f.b LENGTH:451bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 451
Score = 26.7 bits (52), Expect = 0.79
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -1 / -3
Query: 336 GNNYQTPCCRLTDSYSK 286
G ++QTPC RL S+S+
Sbjct: 125 GESHQTPCLRLWGSWSR 75
>CL763CT852CN1626 cl763ct852cn1626 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgmy001cD10f.b,mgm
Length = 592
Score = 26.3 bits (51), Expect = 1.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3 / +1
Query: 192 ESGVMS*MERQLWSWTCFKVRIHNMS 269
++G + RQL SW C + R+H+ S
Sbjct: 106 QNGCSNVKHRQLPSWHCQRHRLHDPS 183
>CL732CT817CN1590 cl732ct817cn1590 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy001aH09f.b,mgm
Length = 784
Score = 26.3 bits (51), Expect = 1.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1 / -2
Query: 243 NKSKTTIVFPSRTLPPTPIAIRHPCWLE*SVARSCFQVAKSAET 112
++S+ P LPP + + P W V+RSC + S +
Sbjct: 345 SRSRLPFFLPPFFLPPFFLPVPLPAWWGERVSRSCSSSSASTSS 214
Score = 25.8 bits (50), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1 / -2
Query: 243 NKSKTTIVFPSRTLPPTPIAIRHPCWLE*SVARSC 139
++S+ P LPP + + P W V+RSC
Sbjct: 216 SRSRLPFFLPPFFLPPFFLPVPLPAWWGERVSRSC 112
Score = 24.4 bits (47), Expect = 3.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1 / -2
Query: 237 SKTTIVFPSRTLPPTPIAIRHPCWLE*SVARSC 139
S+ P LPP + + P W V+RSC
Sbjct: 471 SRLPFFLPPFFLPPFFLPVPLPAWWGERVSRSC 373
>GI14180436 gi14180436 LENGTH:763bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 763
Score = 25.8 bits (50), Expect = 1.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1 / +2
Query: 318 PCCRLTDSYSKEKPCPLT 265
PCC T S +K P PL+
Sbjct: 197 PCCCSTQSGTKHSPSPLS 250
>CL40CT56CN169 cl40ct56cn169 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:24; ESTS:gi14180935,mgcm004dC
Length = 1076
Score = 25.8 bits (50), Expect = 1.5
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = -1 / -3
Query: 216 PSRTLPPTPIAIRHPCW 166
PSR L PTP+ P W
Sbjct: 759 PSRVLSPTPVKTE*PPW 709
>CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537287g,gi25372
Length = 1531
Score = 25.8 bits (50), Expect = 1.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / -3
Query: 205 CPRWKDNCGLG 237
CPRW C LG
Sbjct: 506 CPRWSPTCALG 474
>CL480CT552CN1232 cl480ct552cn1232 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3392290g,mgcm002
Length = 869
Score = 25.8 bits (50), Expect = 1.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / -3
Query: 205 CPRWKDNCGLG 237
CPRW C LG
Sbjct: 294 CPRWSPTCALG 262
>CL1438CT1542CN2338 cl1438ct1542cn2338 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs006aG09f.b,m
Length = 684
Score = 25.3 bits (49), Expect = 2.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3 / -1
Query: 220 LSI*DITPDSNCYKASMLARVVSCSFLFPSREICRNISV 104
LS+ +TP C RV C R +C N+SV
Sbjct: 594 LSLPPLTPIVECSPVVSECRVYVCM*PGKPRRVCANVSV 478
>CL326CT381CN858 cl326ct381cn858 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14180808,mgns011d
Length = 827
Score = 25.3 bits (49), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +2 / -2
Query: 335 PRINFCTNNGILLAKVHRTGYLLS 406
PR+ C NN +L K+ R G LS
Sbjct: 139 PRMAACPNNWLLRGKLTRQGNWLS 68
>CL278CT329CN778 cl278ct329cn778 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgns012cF08f.b; LENG
Length = 440
Score = 25.3 bits (49), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3 / -1
Query: 231 SWTCFKVRIHNMSMDRAFLSNMNQS 305
SWTCF R+ S R+ + + + S
Sbjct: 317 SWTCFPGRLPRTSSRRSIIESRSTS 243
>CL49CT72CN261 cl49ct72cn261 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi14180986,gi3391858g;
Length = 1303
Score = 25.3 bits (49), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = -1 / +3
Query: 279 PCPLTYCEFGL*NKSKTTIVFPSRTLPPTPIAIRHP 172
P P T+ L + + ++ PS LPP P + R P
Sbjct: 477 PSPHTWTSTRLLSLAPPSLAAPS*RLPPRPTSRRSP 584
>CL89CT122CN393 cl89ct122cn393 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181422,gi1418098
Length = 1108
Score = 22.1 bits (42), Expect(2) = 2.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 15 LRLGMGLPLSRV 50
L LGMGLP S V
Sbjct: 718 LELGMGLPASSV 683
Score = 20.8 bits (39), Expect(2) = 2.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / -2
Query: 179 LIAIGVGGNV 208
L+AIGVGG V
Sbjct: 630 LVAIGVGGAV 601
>MGCM009AA10F.B mgcm009aA10f.b LENGTH:332bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 332
Score = 24.9 bits (48), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / -3
Query: 16 CGSAWACP*VASTPSTGPETS 78
C + +CP STPST P ++
Sbjct: 249 CRLSCSCPRPRSTPSTSPSSA 187
>CL278CT330CN779 cl278ct330cn779 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi14180962,gi339144
Length = 1812
Score = 24.9 bits (48), Expect = 2.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3 / -2
Query: 231 SWTCFKVRIHNMSMDRAFLSNMNQS 305
SWTCF R+ S R+ + + + S
Sbjct: 824 SWTCFPGRLPRTSSRRSIIESRSTS 750
>GI14180594 gi14180594 LENGTH:627bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 627
Score = 24.9 bits (48), Expect = 2.8
Identities = 9/21 (42%), Positives = 10/21 (46%)
Frame = -1 / +2
Query: 315 CCRLTDSYSKEKPCPLTYCEF 253
CC L D+ E PC Y F
Sbjct: 347 CCSLGDNNLLEDPCKYLYLTF 409
>MGCM002BF09F.B mgcm002bF09f.b LENGTH:252bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 252
Score = 24.9 bits (48), Expect = 2.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2 / +2
Query: 401 IDTQSYEPLPIISHCLYKS*SVETITKLHAAD*LIHIRKKSP 276
I T +++ + ++ L + + + +LH *LIH R+ P
Sbjct: 74 IQTTNHQHVSLLLQLLLRQLQLLLLLQLHPLS*LIHPRRHRP 199
>CL526CT600CN1320 cl526ct600cn1320 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3392009g,mgcs002
Length = 906
Score = 24.4 bits (47), Expect = 3.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2 / -2
Query: 347 FCTNNGILLAKVHRTGYLLSRFYHK 421
FC I+ + ++T + SRFYH+
Sbjct: 503 FCVPLSIVSFEENKTLFFSSRFYHR 429
>CL362CT425CN944 cl362ct425cn944 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180668,gi3392125
Length = 1209
Score = 24.4 bits (47), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (49%)
Frame = +2 / +3
Query: 176 CLIAIGVGGNVLDGKTIVVLDLFQSP 253
C +A V L KT++ LFQ P
Sbjct: 747 CSLANAVVATSLSAKTVLACPLFQKP 824
>CL1281CT1384CN2175 cl1281ct1384cn2175 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:16; ESTS:mgns001cH01f.b,
Length = 1149
Score = 24.4 bits (47), Expect = 3.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1 / +3
Query: 231 TTIVFPSRTLPPTPIAIRH 175
TT +FP L PI++R+
Sbjct: 213 TTQMFPPEALMEQPISLRN 269
>CL946CT1045CN1825 cl946ct1045cn1825 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy006dC11f.b,mg
Length = 544
Score = 24.4 bits (47), Expect = 3.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1 / +1
Query: 453 IPASVLKCFHHL 418
+P S L+ FHH
Sbjct: 217 LPHSTLRSFHHW 252
>MGAP007BE07F.B mgap007bE07f.b LENGTH:506bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 506
Score = 24.4 bits (47), Expect = 3.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3 / +2
Query: 348 FVQTMGYYWQRFIGLGIYYRG 410
F++ G+Y + +G YYRG
Sbjct: 332 FMEDFGFYETKRVGEKTYYRG 394
>MGNS012CA12F.B mgns012cA12f.b LENGTH:380bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 380
Score = 24.4 bits (47), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -3 / +2
Query: 97 PSRLCKSRFPAQYSA*TRLKGRP 29
PSR+ +PAQ+ + TRL+ P
Sbjct: 260 PSRMAPKAWPAQHLSATRLQQVP 328
>GI3391625G gi3391625g LENGTH:1010bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1010
Score = 24.4 bits (47), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3 / -3
Query: 205 ITPDSNCYKASMLARVVSCSFL 140
+T S C +AS+ ARV SC L
Sbjct: 237 MTGISRC*RASLTARVCSCCSL 172
>CL845CT941CN1716 cl845ct941cn1716 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003aE08f.b,mgn
Length = 383
Score = 24.4 bits (47), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +1 / -2
Query: 22 SAWACP*VASTPSTGPE 72
S+W CP*+AS P P+
Sbjct: 247 SSWYCP*LASRPWR*PD 197
>GI14180601 gi14180601 LENGTH:717bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 717
Score = 24.0 bits (46), Expect = 5.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 233 RPQLSFHLGHYPRLQ 189
RP + FH+GH+ LQ
Sbjct: 164 RPLVIFHVGHHSDLQ 208
>CL567CT641CN1378 cl567ct641cn1378 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391766g,mgcs008
Length = 766
Score = 24.0 bits (46), Expect = 5.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1 / -2
Query: 352 YKQWDIIGKGS*DWV 396
+ QW ++G GS WV
Sbjct: 753 FGQWPVVGNGSSIWV 709
>GI14181215 gi14181215 LENGTH:660bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 660
Score = 24.0 bits (46), Expect = 5.3
Identities = 6/14 (42%), Positives = 9/14 (63%)
Frame = +3 / +2
Query: 336 HGSTFVQTMGYYWQ 377
+G FV +G+YW
Sbjct: 557 YGRQFVDYIGFYWT 598
>MGCS010AA02F.B mgcs010aA02f.b LENGTH:573bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 573
Score = 24.0 bits (46), Expect = 5.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2 / +3
Query: 395 YLLSRFYHKW 424
+ LSRFYH W
Sbjct: 297 HALSRFYHSW 326
>MGCM001DD07F.B mgcm001dD07f.b LENGTH:296bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 296
Score = 24.0 bits (46), Expect = 5.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1 / +3
Query: 10 PICGSAWACP*VASTPSTGPETSTC 84
P ++ P AS PST TSTC
Sbjct: 60 PSSRRSFTLPSSASNPSTSLTTSTC 134
>MGNS010BH07F.B mgns010bH07f.b LENGTH:551bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 551
Score = 24.0 bits (46), Expect = 5.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1 / -2
Query: 321 TPCCRLTDSYSKEKPCPLTYCEFGL*NKSKTTIVF 217
T L S + PC L++C + SKTT F
Sbjct: 304 TTLASLLTSLERLLPCSLSWCALRSISVSKTTNFF 200
>CL90CT123CN394 cl90ct123cn394 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181421,mgmy004aF
Length = 713
Score = 24.0 bits (46), Expect = 5.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 231 SWTCFKVRIHNMSMD 275
+W C+++RIH +D
Sbjct: 299 TWDCYEMRIHKRLID 343
>MGCS010AA01F.B mgcs010aA01f.b LENGTH:428bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 428
Score = 24.0 bits (46), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -3 / +1
Query: 109 SVP*PSRLCKSRFPAQYSA*TRLKGRPMPSRR 14
+ P SRLC + SA T + RP+PS R
Sbjct: 259 ATPTGSRLCPTPSRTAASASTTV*TRPLPSPR 354
>CL937CT1036CN1816 cl937ct1036cn1816 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgmy006aD09f.b,mg
Length = 519
Score = 24.0 bits (46), Expect = 5.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1 / -1
Query: 310 AAWSLVIVSTDQLLYKQWDIIG 375
A W TDQ + +WD++G
Sbjct: 75 ALWKFK*SRTDQKVSARWDLVG 10
>MGCS005AF02F.B mgcs005aF02f.b LENGTH:456bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 456
Score = 24.0 bits (46), Expect = 5.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / +1
Query: 48 VYAEYWAGNLDLHS 89
VY W GN+DL S
Sbjct: 196 VYCTRWCGNVDLQS 237
>GI14180618 gi14180618 LENGTH:657bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 657
Score = 23.5 bits (45), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (52%)
Frame = +2 / -3
Query: 239 LFQSPNSQYVNGQGFSFEYESVNRQHGV 322
L+QSP+ + FSF + + RQ V
Sbjct: 94 LYQSPDERMWFSFSFSFLFAGLKRQENV 11
>CL1096CT1199CN1986 cl1096ct1199cn1986 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm004aF10f.b,m
Length = 702
Score = 23.5 bits (45), Expect = 7.3
Identities = 7/18 (38%), Positives = 9/18 (49%)
Frame = +1 / +1
Query: 166 PAWMPYSNWSRG*CPRWK 219
P W P S+G C W+
Sbjct: 478 PDWHPELRGSQGVCHFWR 531
>GI3392296G gi3392296g LENGTH:823bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 823
Score = 23.5 bits (45), Expect = 7.3
Identities = 9/21 (42%), Positives = 15/21 (70%)
Frame = -3 / -3
Query: 166 ARVVSCSFLFPSREICRNISV 104
+R+ + SFL P+R I + I+V
Sbjct: 155 SRLTTLSFLDPARRISKRINV 93
>CL696CT779CN1549 cl696ct779cn1549 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgap008bH03f.b,mgcs
Length = 724
Score = 23.5 bits (45), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Frame = -1 / +2
Query: 240 KSKTTIVFPSRTLPPTPIAIRHP 172
+ +TT+ F +R P P+ R P
Sbjct: 611 RPQTTVSFSARPSTPAPLEARSP 679
>CL201CT241CN621 cl201ct241cn621 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180673,gi141805
Length = 964
Score = 23.5 bits (45), Expect = 7.3
Identities = 7/26 (26%), Positives = 15/26 (56%)
Frame = +2 / +2
Query: 122 DFATWKQERATDYSSQHGCLIAIGVG 199
+ A+W+ + + Y +QHG + + G
Sbjct: 518 EVASWQAQGSVSYPAQHGTGLILTYG 595
>CL138CT175CN490 cl138ct175cn490 COVERAGE:0.96; CRAWID: 2;
TOTAL_ESTS:23; ESTS:gi14181334,gi33923
Length = 1097
Score = 23.5 bits (45), Expect = 7.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3 / -2
Query: 73 FPAQYSA*TRLKGRPMPSRRL 11
FP +Y + +G+P P RL
Sbjct: 475 FPCRYHGQRQSRGQPCPQERL 413
>CL378CT442CN965 cl378ct442cn965 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy001aA07f.b,mgmy
Length = 627
Score = 23.5 bits (45), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1 / -3
Query: 121 RFRDLETRTSN*LLEPAWMPYSNWS 195
R R ETR + +++P +P S WS
Sbjct: 541 RRRAQETRLNPEVVDPCPIPGSVWS 467
>MGCM010CF12F.B mgcm010cF12f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 23.5 bits (45), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / +3
Query: 236 PRPQLSFHLGHYPRLQLL 183
P P L GHYP L +L
Sbjct: 360 PPPTLLVLAGHYPSLSVL 413
>CL1346CT1449CN2241 cl1346ct1449cn2241 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns008cG04f.b,m
Length = 720
Score = 23.5 bits (45), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3 / -1
Query: 271 IDIL*IRTLKQVQDHNCLSI 212
ID+L I T V D++C+S+
Sbjct: 201 IDVLAILTAVVVSDYSCVSV 142
>MGCS009BC06F.B mgcs009bC06f.b LENGTH:482bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 482
Score = 23.5 bits (45), Expect = 7.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3 / +3
Query: 63 WAGNLDLHSLEG 98
W GNLDL EG
Sbjct: 309 WVGNLDLEITEG 344
>MGCS005BB09F.B mgcs005bB09f.b LENGTH:437bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 437
Score = 23.5 bits (45), Expect = 7.3
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +1 / +3
Query: 370 IGKGS*DWVSIIEVLPQMVKALQNRGWYHK 459
+G+G IEV P + GWY +
Sbjct: 3 LGRGRLQHCLYIEVFPYQESHCRRTGWYQR 92
>MGCS010DG04F.B mgcs010dG04f.b LENGTH:299bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 299
Score = 23.5 bits (45), Expect = 7.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1 / -1
Query: 67 PETSTCIALKVTERICFCRFRD 132
PET C+A+ V ER R D
Sbjct: 275 PETHVCLAVLVNERRLHPRAHD 210
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3333393
Number of Sequences: 4717
Number of extensions: 47928
Number of successful extensions: 1875
Number of sequences better than 10.0: 71
length of query: 159
length of database: 847,903
effective HSP length: 39
effective length of query: 119
effective length of database: 663,940
effective search space: 79008860
effective search space used: 79008860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 44 (23.1 bits)