BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1612_C11_F22ZT.seq
(210 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS010AD03F.B mgns010aD03f.b LENGTH:361bp ; DIRECTION:0 ; CLONE... 28 1.5
MGCM002AE04F.B mgcm002aE04f.b LENGTH:459bp ; DIRECTION:0 ; CLONE... 28 1.5
GI3391745G gi3391745g LENGTH:771bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 1.5
GI14180866 gi14180866 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 1.5
MGCM008BD12F.B mgcm008bD12f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 26 6.0
MGCM003DE01F.B mgcm003dE01f.b LENGTH:457bp ; DIRECTION:0 ; CLONE... 26 6.0
MGCM001DD10F.B mgcm001dD10f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 26 6.0
MGAP007CE11F.B mgap007cE11f.b LENGTH:596bp ; DIRECTION:0 ; CLONE... 26 6.0
CL96CT129CN402 cl96ct129cn402 COVERAGE:0.97; CRAWID: 2; TOTAL_ES... 26 6.0
CL876CT974CN1749 cl876ct974cn1749 COVERAGE:0.99; CRAWID: 1; TOTA... 26 6.0
CL76CT108CN368 cl76ct108cn368 COVERAGE:1.0; CRAWID: 2; TOTAL_EST... 26 6.0
CL533CT607CN1330 cl533ct607cn1330 COVERAGE:0.99; CRAWID: 1; TOTA... 26 6.0
CL516CT590CN1302 cl516ct590cn1302 COVERAGE:0.99; CRAWID: 2; TOTA... 26 6.0
CL218CT258CN653 cl218ct258cn653 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 6.0
CL1387CT1490CN2286 cl1387ct1490cn2286 COVERAGE:0.99; CRAWID: 1; ... 26 6.0
CL1079CT1181CN1968 cl1079ct1181cn1968 COVERAGE:0.99; CRAWID: 1; ... 26 6.0
CL105CT138CN417 cl105ct138cn417 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 6.0
CL1036CT1137CN1920 cl1036ct1137cn1920 COVERAGE:0.99; CRAWID: 1; ... 26 6.0
>MGNS010AD03F.B mgns010aD03f.b LENGTH:361bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 361
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 cagcatcaatggcg 180
||||||||||||||
Sbjct: 202 cagcatcaatggcg 215
>MGCM002AE04F.B mgcm002aE04f.b LENGTH:459bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 459
Score = 28.2 bits (14), Expect = 1.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 139 tctttgagatccggtttt 156
||||||||||| ||||||
Sbjct: 56 tctttgagatctggtttt 39
>GI3391745G gi3391745g LENGTH:771bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 771
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 gcacttgttctgcc 27
||||||||||||||
Sbjct: 646 gcacttgttctgcc 633
>GI14180866 gi14180866 LENGTH:645bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 645
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 atacagcaggctga 200
||||||||||||||
Sbjct: 440 atacagcaggctga 453
>MGCM008BD12F.B mgcm008bD12f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 82 agttgcacgttta 94
|||||||||||||
Sbjct: 50 agttgcacgttta 38
>MGCM003DE01F.B mgcm003dE01f.b LENGTH:457bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 457
Score = 26.3 bits (13), Expect = 6.0
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 55 cacatcaaaagcaatgc 71
||||||||||| |||||
Sbjct: 329 cacatcaaaaggaatgc 345
>MGCM001DD10F.B mgcm001dD10f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 135 gtattctttgaga 147
|||||||||||||
Sbjct: 225 gtattctttgaga 213
>MGAP007CE11F.B mgap007cE11f.b LENGTH:596bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 596
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 86 gcacgtttaatac 98
|||||||||||||
Sbjct: 199 gcacgtttaatac 211
>CL96CT129CN402 cl96ct129cn402 COVERAGE:0.97; CRAWID: 2;
TOTAL_ESTS:9; ESTS:gi14181126,gi1418110
Length = 1148
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 50 tcgctcacatcaa 62
|||||||||||||
Sbjct: 127 tcgctcacatcaa 139
>CL876CT974CN1749 cl876ct974cn1749 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy003cG01f.b,mgn
Length = 503
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 71 cgactggcccaag 83
|||||||||||||
Sbjct: 314 cgactggcccaag 326
>CL76CT108CN368 cl76ct108cn368 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3392203g; LENGTH:90
Length = 900
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 112 ctgtcagcaccca 124
|||||||||||||
Sbjct: 268 ctgtcagcaccca 256
>CL533CT607CN1330 cl533ct607cn1330 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:10; ESTS:gi3391948g,mgap00
Length = 784
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 164 ccacagcatcaat 176
|||||||||||||
Sbjct: 19 ccacagcatcaat 31
>CL516CT590CN1302 cl516ct590cn1302 COVERAGE:0.99; CRAWID: 2;
TOTAL_ESTS:27; ESTS:gi3392058g,mgap00
Length = 1054
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 cagcatcaatggc 179
|||||||||||||
Sbjct: 837 cagcatcaatggc 825
>CL218CT258CN653 cl218ct258cn653 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14181145; LENGTH:6
Length = 631
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 60 caaaagcaatgcg 72
|||||||||||||
Sbjct: 512 caaaagcaatgcg 500
>CL1387CT1490CN2286 cl1387ct1490cn2286 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs002aG12f.b,m
Length = 382
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 49 atcgctcacatca 61
|||||||||||||
Sbjct: 199 atcgctcacatca 211
>CL1079CT1181CN1968 cl1079ct1181cn1968 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm003cH08f.b,m
Length = 435
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 71 cgactggcccaag 83
|||||||||||||
Sbjct: 388 cgactggcccaag 400
>CL105CT138CN417 cl105ct138cn417 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181393,gi3391423
Length = 1186
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 197 ctgaataccatgg 209
|||||||||||||
Sbjct: 1083 ctgaataccatgg 1071
>CL1036CT1137CN1920 cl1036ct1137cn1920 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm002cD09f.b,m
Length = 469
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 122 ccaaacccagtct 134
|||||||||||||
Sbjct: 432 ccaaacccagtct 420
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217
Number of Sequences: 4717
Number of extensions: 217
Number of successful extensions: 55
Number of sequences better than 10.0: 18
length of query: 210
length of database: 2,543,711
effective HSP length: 14
effective length of query: 196
effective length of database: 2,477,673
effective search space: 485623908
effective search space used: 485623908
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)