TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1612_C11_F22ZT.seq
(210 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS011AF02F.B mgns011aF02f.b LENGTH:434bp ; DIRECTION:0 ; CLONE... 28 0.13
GI2537239G gi2537239g LENGTH:1343bp ; DIRECTION:0 ; CLONE: n/a ;... 23 0.39
GI3392271G gi3392271g LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 0.63
MGCS010DF05F.B mgcs010dF05f.b LENGTH:321bp ; DIRECTION:0 ; CLONE... 25 0.86
CL236CT279CN688 cl236ct279cn688 COVERAGE:0.95; CRAWID: 2; TOTAL_... 24 1.2
CL908CT1007CN1786 cl908ct1007cn1786 COVERAGE:0.98; CRAWID: 1; TO... 24 1.6
CL1284CT1387CN2178 cl1284ct1387cn2178 COVERAGE:0.99; CRAWID: 1; ... 24 1.6
GI14180760 gi14180760 LENGTH:639bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 2.2
GI14181102 gi14181102 LENGTH:652bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 2.2
CL399CT465CN1030 cl399ct465cn1030 COVERAGE:1.0; CRAWID: 4; TOTAL... 24 2.2
MGCM006CH10F.B mgcm006cH10f.b LENGTH:283bp ; DIRECTION:0 ; CLONE... 23 3.1
CL79CT112CN375 cl79ct112cn375 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 23 3.1
MGCM004CC04F.B mgcm004cC04f.b LENGTH:390bp ; DIRECTION:0 ; CLONE... 23 3.1
CL53CT78CN276 cl53ct78cn276 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS... 23 4.2
MGMY005DB03F.B mgmy005dB03f.b LENGTH:493bp ; DIRECTION:0 ; CLONE... 23 4.2
MGCM004CA08F.B mgcm004cA08f.b LENGTH:305bp ; DIRECTION:0 ; CLONE... 23 4.2
MGCM002BG09F.B mgcm002bG09f.b LENGTH:387bp ; DIRECTION:0 ; CLONE... 23 4.2
GI14180777 gi14180777 LENGTH:941bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 4.2
CL180CT217CN566 cl180ct217cn566 COVERAGE:0.99; CRAWID: 1; TOTAL_... 23 4.2
GI14180166 gi14180166 LENGTH:777bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 4.2
MGCS009CC06F.B mgcs009cC06f.b LENGTH:453bp ; DIRECTION:0 ; CLONE... 22 5.8
CL187CT227CN602 cl187ct227cn602 COVERAGE:0.98; CRAWID: 1; TOTAL_... 22 5.8
CL187CT226CN599 cl187ct226cn599 COVERAGE:0.99; CRAWID: 1; TOTAL_... 22 5.8
MGCS008DD03F.B mgcs008dD03f.b LENGTH:415bp ; DIRECTION:0 ; CLONE... 22 5.8
GI3392331G gi3392331g LENGTH:796bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 5.8
GI14181199 gi14181199 LENGTH:661bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 5.8
CL18CT24CN80 cl18ct24cn80 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:1... 22 5.8
CL189CT229CN604 cl189ct229cn604 COVERAGE:0.98; CRAWID: 1; TOTAL_... 22 5.8
CL594CT669CN1418 cl594ct669cn1418 COVERAGE:0.98; CRAWID: 1; TOTA... 22 5.8
CL148CT185CN509 cl148ct185cn509 COVERAGE:0.99; CRAWID: 1; TOTAL_... 22 5.8
CL1260CT1363CN2153 cl1260ct1363cn2153 COVERAGE:0.97; CRAWID: 1; ... 22 5.8
CL1076CT1177CN1964 cl1076ct1177cn1964 COVERAGE:1.0; CRAWID: 1; T... 22 5.8
CL187CT225CN598 cl187ct225cn598 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 22 5.8
MGCS008CH12F.B mgcs008cH12f.b LENGTH:527bp ; DIRECTION:0 ; CLONE... 22 5.8
GI3392354G gi3392354g LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 5.8
GI14180312 gi14180312 LENGTH:696bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 5.8
CL591CT666CN1415 cl591ct666cn1415 COVERAGE:0.98; CRAWID: 1; TOTA... 22 5.8
MGCM004BD01F.B mgcm004bD01f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 22 5.8
MGNS009AG08F.B mgns009aG08f.b LENGTH:289bp ; DIRECTION:0 ; CLONE... 19 6.5
MGCM004DC03F.B mgcm004dC03f.b LENGTH:452bp ; DIRECTION:0 ; CLONE... 22 8.0
CL1287CT1390CN2181 cl1287ct1390cn2181 COVERAGE:0.99; CRAWID: 1; ... 22 8.0
MGAP008DB09F.B mgap008dB09f.b LENGTH:474bp ; DIRECTION:0 ; CLONE... 22 8.0
GI14181045 gi14181045 LENGTH:910bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 8.0
MGCS004CA02F.B mgcs004cA02f.b LENGTH:501bp ; DIRECTION:0 ; CLONE... 22 8.0
GI14181372 gi14181372 LENGTH:653bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 8.0
MGMY006BB08F.B mgmy006bB08f.b LENGTH:183bp ; DIRECTION:0 ; CLONE... 22 8.0
CL891CT990CN1768 cl891ct990cn1768 COVERAGE:0.99; CRAWID: 1; TOTA... 22 8.0
CL472CT544CN1213 cl472ct544cn1213 COVERAGE:1.0; CRAWID: 1; TOTAL... 22 8.0
CL431CT500CN1132 cl431ct500cn1132 COVERAGE:0.97; CRAWID: 1; TOTA... 22 8.0
CL152CT189CN515 cl152ct189cn515 COVERAGE:0.99; CRAWID: 1; TOTAL_... 22 8.0
CL235CT278CN685 cl235ct278cn685 COVERAGE:0.98; CRAWID: 1; TOTAL_... 22 8.0
MGCM002CH02F.B mgcm002cH02f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 22 8.0
>MGNS011AF02F.B mgns011aF02f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 434
Score = 27.6 bits (54), Expect = 0.13
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2 / -2
Query: 122 PNPVCIL*DPVLCYPQHQWR 181
P C L DP C P H+W+
Sbjct: 301 PTRPCQLCDPRACVPSHRWQ 242
>GI2537239G gi2537239g LENGTH:1343bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1343
Score = 23.1 bits (44), Expect(2) = 0.39
Identities = 8/23 (34%), Positives = 13/23 (55%)
Frame = +1 / +1
Query: 64 SNATGPSCTFNTGNSRLSAPKPS 132
+ +T P C T + L+ P+PS
Sbjct: 577 ARSTAPPCLSATSPATLARPRPS 645
Score = 22.6 bits (43), Expect = 4.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2 / -2
Query: 209 PWYSACCMMSAI 174
PWYS+C + +I
Sbjct: 949 PWYSSCRLQGSI 914
Score = 21.2 bits (40), Expect(2) = 0.39
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2 / +1
Query: 17 LVLPYCLCSSQSLTSKA 67
L P C CSS + T+++
Sbjct: 535 LTAPPCTCSSAATTARS 585
>GI3392271G gi3392271g LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 857
Score = 25.3 bits (49), Expect = 0.63
Identities = 11/28 (39%), Positives = 14/28 (49%)
Frame = +2 / +1
Query: 122 PNPVCIL*DPVLCYPQHQWRSSYSRLNT 205
P P C+ DP CY ++ SRL T
Sbjct: 610 PLPQCVYKDPDCCYTPSCVHATDSRLRT 693
>MGCS010DF05F.B mgcs010dF05f.b LENGTH:321bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 321
Score = 24.9 bits (48), Expect = 0.86
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2 / +2
Query: 209 PWYSACCMMSAI 174
PWY CC++ A+
Sbjct: 56 PWYYLCCILPAL 91
>CL236CT279CN688 cl236ct279cn688 COVERAGE:0.95; CRAWID: 2;
TOTAL_ESTS:2; ESTS:gi14181006,gi339137
Length = 1300
Score = 24.4 bits (47), Expect = 1.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1 / +3
Query: 127 PSLYSLRSGFMLSTASMALIIQQAEY 204
PSLYSL GF L S IIQ Y
Sbjct: 858 PSLYSL*LGFWLWRISALDIIQFDHY 935
>CL908CT1007CN1786 cl908ct1007cn1786 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:16; ESTS:mgmy004dG09f.b,m
Length = 993
Score = 24.0 bits (46), Expect = 1.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +2
Query: 170 HQWRSSYSRLN 202
HQWRSS S +N
Sbjct: 680 HQWRSSVSSVN 712
>CL1284CT1387CN2178 cl1284ct1387cn2178 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns001dD06f.b,m
Length = 523
Score = 24.0 bits (46), Expect = 1.6
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = +1 / +2
Query: 55 HIKSNATGPSCT 90
H+ +NATGPS T
Sbjct: 269 HLATNATGPSVT 304
>GI14180760 gi14180760 LENGTH:639bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 639
Score = 23.5 bits (45), Expect = 2.2
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = -2 / +2
Query: 149 DLKEYRLGLGADSLEFPVLNVQLGPVALL 63
DL ++ LG GAD+ + LGP ++
Sbjct: 131 DLIDHTLGRGADTQDRHAAGGDLGPAGVV 217
>GI14181102 gi14181102 LENGTH:652bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 652
Score = 23.5 bits (45), Expect = 2.2
Identities = 7/16 (43%), Positives = 13/16 (80%)
Frame = +3 / -1
Query: 72 DWPKLHV*YGKF*TVS 119
+WP++ V +G+ *TV+
Sbjct: 238 EWPRVRVAFGRI*TVA 191
>CL399CT465CN1030 cl399ct465cn1030 COVERAGE:1.0; CRAWID: 4;
TOTAL_ESTS:1; ESTS:gi14180165; LENGTH:
Length = 914
Score = 23.5 bits (45), Expect = 2.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 167 QHQWRSSYSRLN 202
+H WR S+SRL+
Sbjct: 296 RHSWRCSFSRLS 331
>MGCM006CH10F.B mgcm006cH10f.b LENGTH:283bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 283
Score = 23.1 bits (44), Expect = 3.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3 / -2
Query: 58 CERLATA*TIRQNKCGKQR 2
C+R TA + ++CG+QR
Sbjct: 174 CKRSRTASPLLSHECGEQR 118
>CL79CT112CN375 cl79ct112cn375 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:12; ESTS:gi14180729,gi141806
Length = 1279
Score = 23.1 bits (44), Expect = 3.1
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = +2 / -1
Query: 29 YCLCSSQSLTSKAMRLAQVARLIREILDCQHPNP 130
Y + S++ + L VA R+I C H NP
Sbjct: 982 YSVRVPSSISRSYLPLVTVAIRARDIGGCAHANP 881
>MGCM004CC04F.B mgcm004cC04f.b LENGTH:390bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 390
Score = 23.1 bits (44), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1 / +1
Query: 49 IAHIKSNATGPSCTFNTGNSRL 114
++ +K +T PSC T RL
Sbjct: 178 LSTLKKPSTSPSCRMLTAKLRL 243
>CL53CT78CN276 cl53ct78cn276 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi14181495,gi3392240g
Length = 995
Score = 22.6 bits (43), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1 / -3
Query: 165 G*HKTGSQRIQTGFGC*QSR 106
G* +TGS R +G GC + R
Sbjct: 102 G*ERTGSGRKGSGTGCAEFR 43
>MGMY005DB03F.B mgmy005dB03f.b LENGTH:493bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 493
Score = 22.6 bits (43), Expect = 4.2
Identities = 18/52 (34%), Positives = 23/52 (43%)
Frame = +1 / -3
Query: 46 PIAHIKSNATGPSCTFNTGNSRLSAPKPSLYSLRSGFMLSTASMALIIQQAE 201
P H+K+ S + S APK S S + ST+SMAL AE
Sbjct: 362 PKLHMKAFFVQKSVKRKSP*SHAKAPKLSFIYYVSETV*STSSMALSPVSAE 207
>MGCM004CA08F.B mgcm004cA08f.b LENGTH:305bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 305
Score = 22.6 bits (43), Expect = 4.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2 / -2
Query: 158 CYPQHQWRSSYS 193
C+ WRSSYS
Sbjct: 70 CFGNTSWRSSYS 35
>MGCM002BG09F.B mgcm002bG09f.b LENGTH:387bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 387
Score = 22.6 bits (43), Expect = 4.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2 / -3
Query: 95 IREILDCQHP 124
IR +LDC +P
Sbjct: 124 IRSVLDCGNP 95
>GI14180777 gi14180777 LENGTH:941bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 941
Score = 22.6 bits (43), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2 / -3
Query: 20 VLPYCLCSSQSLT 58
VLP CLC +SL+
Sbjct: 336 VLPSCLCLCESLS 298
>CL180CT217CN566 cl180ct217cn566 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:23; ESTS:gi14181234,gi14181
Length = 1111
Score = 22.6 bits (43), Expect = 4.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2 / +1
Query: 143 KEYRLGLGADSLEFPVLNVQLGPVAL 66
K+ R LGA SL FP+ + G L
Sbjct: 913 KKTRAELGAPSLSFPMRKGRTGKFRL 990
>GI14180166 gi14180166 LENGTH:777bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 777
Score = 22.6 bits (43), Expect = 4.2
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2 / +2
Query: 158 CYPQHQWR 181
CY HQWR
Sbjct: 425 CYRHHQWR 448
>MGCS009CC06F.B mgcs009cC06f.b LENGTH:453bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 453
Score = 22.1 bits (42), Expect = 5.8
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = +1 / +2
Query: 46 PIAHIKSNATGPSCTFNTGNSRLSAPKPSL 135
P A + ++A G CTF L PKP +
Sbjct: 302 PEALVPNSARGH*CTFLFSFFSLVQPKPQV 391
>CL187CT227CN602 cl187ct227cn602 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:10; ESTS:gi3391736g,mgap010
Length = 783
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 154 NRISKNTDWVWVLTV 110
N ++ DWV VLTV
Sbjct: 135 NEYTERADWVVVLTV 91
>CL187CT226CN599 cl187ct226cn599 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181208,gi141809
Length = 1035
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 154 NRISKNTDWVWVLTV 110
N ++ DWV VLTV
Sbjct: 92 NEYTERADWVVVLTV 48
>MGCS008DD03F.B mgcs008dD03f.b LENGTH:415bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 415
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1 / +1
Query: 67 NATGPSCTFNTGNSRLSAPKP 129
+A+G C + R SAP+P
Sbjct: 349 SASGRVCRRASARPRSSAPRP 411
>GI3392331G gi3392331g LENGTH:796bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 796
Score = 22.1 bits (42), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1 / -2
Query: 106 SRLSAPKPSLYSLRSGFMLSTASMA 180
SRLSA SLR+ STAS A
Sbjct: 315 SRLSAGVLRFQSLRAAAAASTASSA 241
>GI14181199 gi14181199 LENGTH:661bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 661
Score = 22.1 bits (42), Expect = 5.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +3 / -1
Query: 54 SHQKQCDWPK 83
+H K C WPK
Sbjct: 259 THAKACRWPK 230
>CL18CT24CN80 cl18ct24cn80 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:12;
ESTS:gi14181564,gi14181113
Length = 1115
Score = 22.1 bits (42), Expect = 5.8
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -2 / -2
Query: 206 WYSACCMMS 180
W+S+CC+ S
Sbjct: 676 WFSSCCLSS 650
>CL189CT229CN604 cl189ct229cn604 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181202,gi339153
Length = 966
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +2 / +3
Query: 89 RLIREILDCQHPNPVCIL 142
R + IL+ HP+P C L
Sbjct: 141 RTSQSILNSPHPSPSCSL 194
>CL594CT669CN1418 cl594ct669cn1418 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391627g,mgap007
Length = 974
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +1
Query: 32 CLCSSQSLTSK 64
C CSSQ+L SK
Sbjct: 157 CRCSSQNLLSK 189
>CL148CT185CN509 cl148ct185cn509 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181316,gi339192
Length = 1096
Score = 22.1 bits (42), Expect = 5.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 33 VYAVANRSHQKQCDW 77
V VA+R+H +Q W
Sbjct: 255 VVRVASRTHMRQTSW 299
>CL1260CT1363CN2153 cl1260ct1363cn2153 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm012dD10f.b,m
Length = 1060
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +3
Query: 126 FGC*QSRISRIKRAT 82
+GC +S + IKRAT
Sbjct: 705 YGCRESLVDGIKRAT 749
>CL1076CT1177CN1964 cl1076ct1177cn1964 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgcs005aF07f.b; L
Length = 482
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1 / -1
Query: 81 WASRIAFDVSDWLLHKQ*G 25
WA R F V WL+ + G
Sbjct: 278 WAQRTVFFVKCWLVEQSDG 222
>CL187CT225CN598 cl187ct225cn598 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007aD12f.b,mgns0
Length = 524
Score = 22.1 bits (42), Expect = 5.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 154 NRISKNTDWVWVLTV 110
N ++ DWV VLTV
Sbjct: 220 NEYTERADWVVVLTV 176
>MGCS008CH12F.B mgcs008cH12f.b LENGTH:527bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 527
Score = 22.1 bits (42), Expect = 5.8
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -1 / +1
Query: 102 SRIKRATWASRIAFDVS 52
S+ K +T ASR F VS
Sbjct: 160 SKAKTSTTASRAVFFVS 210
>GI3392354G gi3392354g LENGTH:857bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 857
Score = 22.1 bits (42), Expect = 5.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2 / -2
Query: 134 CIL*DPVLCYPQHQWRSSY 190
CI L +P H+WR+ +
Sbjct: 397 CIAGPRQLSFPYHRWRALF 341
>GI14180312 gi14180312 LENGTH:696bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 696
Score = 22.1 bits (42), Expect = 5.8
Identities = 5/13 (38%), Positives = 9/13 (68%)
Frame = +2 / +2
Query: 158 CYPQHQWRSSYSR 196
C+P +WR+ + R
Sbjct: 128 CHPSSRWRAQWGR 166
>CL591CT666CN1415 cl591ct666cn1415 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi3391663g,mgns011
Length = 932
Score = 22.1 bits (42), Expect = 5.8
Identities = 10/28 (35%), Positives = 13/28 (45%)
Frame = +2 / +2
Query: 41 SSQSLTSKAMRLAQVARLIREILDCQHP 124
S TS A+RL ++ DCQ P
Sbjct: 620 SXSPATSNALRLLRLXAQCPHGXDCQDP 703
>MGCM004BD01F.B mgcm004bD01f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 22.1 bits (42), Expect = 5.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1 / -1
Query: 106 SRLSAPKPSLYSLRS 150
S LS P PSLY RS
Sbjct: 97 SILSFPAPSLYGKRS 53
>MGNS009AG08F.B mgns009aG08f.b LENGTH:289bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 289
Score = 19.4 bits (36), Expect(2) = 6.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = -1 / -2
Query: 111 SRISRIKRATWASRIAFDVSD 49
S SR A+W+S + S
Sbjct: 114 SSTSRSAAASWSSSASAASSS 52
Score = 18.9 bits (35), Expect(2) = 6.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / -2
Query: 145 SKNTDWVWVL 116
SKNT WV V+
Sbjct: 213 SKNTFWVLVV 184
>MGCM004DC03F.B mgcm004dC03f.b LENGTH:452bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 452
Score = 21.7 bits (41), Expect = 8.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1 / -3
Query: 126 FGC*QSRISRIKRATWA 76
F C R SR++ A WA
Sbjct: 216 FRCCPRRSSRLREALWA 166
>CL1287CT1390CN2181 cl1287ct1390cn2181 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns001dG11f.b,m
Length = 515
Score = 21.7 bits (41), Expect = 8.0
Identities = 6/12 (50%), Positives = 6/12 (50%)
Frame = +1 / +1
Query: 49 IAHIKSNATGPS 84
I HIK T P
Sbjct: 157 ILHIKKRGTAPK 192
>MGAP008DB09F.B mgap008dB09f.b LENGTH:474bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 474
Score = 21.7 bits (41), Expect = 8.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1 / -2
Query: 106 SRLSAPKPSLYSLRSG 153
SRL P P+ ++RSG
Sbjct: 152 SRLRVPPPATLAVRSG 105
>GI14181045 gi14181045 LENGTH:910bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 910
Score = 21.7 bits (41), Expect = 8.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1 / +3
Query: 64 SNATGPSCTFNTGNSRLSAPKPSLY 138
++ G C+F +RL+ P+P Y
Sbjct: 294 THTRGRKCSFLHCATRLARPQPEQY 368
>MGCS004CA02F.B mgcs004cA02f.b LENGTH:501bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 501
Score = 21.7 bits (41), Expect = 8.0
Identities = 8/23 (34%), Positives = 12/23 (51%)
Frame = +1 / +1
Query: 61 KSNATGPSCTFNTGNSRLSAPKP 129
+ N GPS T + N+R +P
Sbjct: 337 RRNNDGPSATASLKNTRAVPRRP 405
>GI14181372 gi14181372 LENGTH:653bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 653
Score = 21.7 bits (41), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1 / +3
Query: 112 LSAPKPSLYSLRSGFMLSTASMA 180
+ P +YS++S STAS A
Sbjct: 495 IRVPNGGVYSIQSSQQTSTASSA 563
>MGMY006BB08F.B mgmy006bB08f.b LENGTH:183bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 183
Score = 21.7 bits (41), Expect = 8.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2 / +1
Query: 101 EILDCQHPNPVCI 139
++LD Q P P+C+
Sbjct: 97 DVLDVQIPFPICL 135
>CL891CT990CN1768 cl891ct990cn1768 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy004aC07f.b,mgn
Length = 592
Score = 21.7 bits (41), Expect = 8.0
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 131 VCIL*DPVLCYPQ 169
+ I+ DP+LC+P+
Sbjct: 35 ISIVIDPLLCFPK 73
>CL472CT544CN1213 cl472ct544cn1213 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3392348g,mgcs004b
Length = 1249
Score = 21.7 bits (41), Expect = 8.0
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = +2 / -3
Query: 110 DCQHPNPVCIL*DPVLCY 163
+C P+P C L VLC+
Sbjct: 419 NCIQPSPHCWLLVTVLCF 366
>CL431CT500CN1132 cl431ct500cn1132 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180216,gi14180
Length = 802
Score = 21.7 bits (41), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = +1 / +3
Query: 64 SNATGPSCTFNTGNSRLSA 120
S ATGPS GN+R+ A
Sbjct: 579 SRATGPSWENCLGNARVLA 635
>CL152CT189CN515 cl152ct189cn515 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:22; ESTS:gi14181307,mgmy001
Length = 719
Score = 21.7 bits (41), Expect = 8.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1 / +3
Query: 159 HKTGSQRIQTGF 124
H G QRI+ G+
Sbjct: 489 HAQGKQRIRMGY 524
>CL235CT278CN685 cl235ct278cn685 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:7; ESTS:gi14181088,gi141810
Length = 933
Score = 21.7 bits (41), Expect = 8.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / +1
Query: 116 QHPNPVCIL*DPVLCYP 166
++P P C P LC+P
Sbjct: 865 ENPLPSCDKQKPALCFP 915
>MGCM002CH02F.B mgcm002cH02f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 21.7 bits (41), Expect = 8.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2 / +3
Query: 161 YPQHQWRSS 187
YPQ +WRS+
Sbjct: 402 YPQQRWRSA 428
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1418894
Number of Sequences: 4717
Number of extensions: 15785
Number of successful extensions: 823
Number of sequences better than 10.0: 78
length of query: 70
length of database: 847,903
effective HSP length: 34
effective length of query: 35
effective length of database: 687,525
effective search space: 24063375
effective search space used: 24063375
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 40 (21.2 bits)