BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1613_A01_A01Z5T.seq
(653 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL1081CT1183CN1970 cl1081ct1183cn1970 COVERAGE:0.98; CRAWID: 1; ... 32 0.32
MGCM005DD04F.B mgcm005dD04f.b LENGTH:522bp ; DIRECTION:0 ; CLONE... 30 1.3
CL573CT647CN1388 cl573ct647cn1388 COVERAGE:1.0; CRAWID: 2; TOTAL... 30 1.3
CL1296CT1399CN2190 cl1296ct1399cn2190 COVERAGE:0.98; CRAWID: 1; ... 30 1.3
CL1151CT1254CN2043 cl1151ct1254cn2043 COVERAGE:0.99; CRAWID: 1; ... 30 1.3
MGNS013AB01F.B mgns013aB01f.b LENGTH:213bp ; DIRECTION:0 ; CLONE... 28 5.0
MGNS012CD01F.B mgns012cD01f.b LENGTH:406bp ; DIRECTION:0 ; CLONE... 28 5.0
MGCS011DG05F.B mgcs011dG05f.b LENGTH:504bp ; DIRECTION:0 ; CLONE... 28 5.0
MGCS004AB03F.B mgcs004aB03f.b LENGTH:227bp ; DIRECTION:0 ; CLONE... 28 5.0
MGCM012CF03F.B mgcm012cF03f.b LENGTH:381bp ; DIRECTION:0 ; CLONE... 28 5.0
MGCM007AH01F.B mgcm007aH01f.b LENGTH:533bp ; DIRECTION:0 ; CLONE... 28 5.0
MGAP008CH10F.B mgap008cH10f.b LENGTH:521bp ; DIRECTION:0 ; CLONE... 28 5.0
GI3391942G gi3391942g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 5.0
GI3391909G gi3391909g LENGTH:743bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 5.0
GI3391768G gi3391768g LENGTH:792bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 5.0
GI3391763G gi3391763g LENGTH:748bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 5.0
GI14181593 gi14181593 LENGTH:669bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 5.0
CL642CT722CN1487 cl642ct722cn1487 COVERAGE:0.98; CRAWID: 1; TOTA... 28 5.0
CL624CT702CN1457 cl624ct702cn1457 COVERAGE:0.99; CRAWID: 1; TOTA... 28 5.0
CL1271CT1374CN2165 cl1271ct1374cn2165 COVERAGE:0.99; CRAWID: 1; ... 28 5.0
>CL1081CT1183CN1970 cl1081ct1183cn1970 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm003dA10f.b,m
Length = 633
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 204 tcacaaaggtctttga 219
||||||||||||||||
Sbjct: 251 tcacaaaggtctttga 266
>MGCM005DD04F.B mgcm005dD04f.b LENGTH:522bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 522
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 378 cgaattcgggtctgc 392
|||||||||||||||
Sbjct: 29 cgaattcgggtctgc 15
>CL573CT647CN1388 cl573ct647cn1388 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3391738g; LENGTH:
Length = 751
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 caggagcgtgtcaag 244
|||||||||||||||
Sbjct: 373 caggagcgtgtcaag 387
>CL1296CT1399CN2190 cl1296ct1399cn2190 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns002aH07f.b,m
Length = 367
Score = 30.2 bits (15), Expect = 1.3
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 241 caagggcgagtttggcgagcagg 263
||||| |||| ||||||||||||
Sbjct: 46 caaggtcgaggttggcgagcagg 68
>CL1151CT1254CN2043 cl1151ct1254cn2043 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm005dB08f.b,m
Length = 479
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 540 tgaagaaccctgagg 554
|||||||||||||||
Sbjct: 365 tgaagaaccctgagg 379
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 635 gcccacttcggcgc 648
||||||||||||||
Sbjct: 191 gcccacttcggcgc 204
>MGNS013AB01F.B mgns013aB01f.b LENGTH:213bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 213
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 523 tttgacaacggtgg 536
||||||||||||||
Sbjct: 177 tttgacaacggtgg 164
>MGNS012CD01F.B mgns012cD01f.b LENGTH:406bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 406
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 ctgggagagtgcca 92
||||||||||||||
Sbjct: 365 ctgggagagtgcca 352
>MGCS011DG05F.B mgcs011dG05f.b LENGTH:504bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 504
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 580 gcagaccttgggca 593
||||||||||||||
Sbjct: 206 gcagaccttgggca 193
>MGCS004AB03F.B mgcs004aB03f.b LENGTH:227bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 227
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 agtgccaagagcgc 99
||||||||||||||
Sbjct: 60 agtgccaagagcgc 47
>MGCM012CF03F.B mgcm012cF03f.b LENGTH:381bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 381
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 caagcagctcgagg 47
||||||||||||||
Sbjct: 162 caagcagctcgagg 175
>MGCM007AH01F.B mgcm007aH01f.b LENGTH:533bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 533
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 aagcatcccaagtc 165
||||||||||||||
Sbjct: 203 aagcatcccaagtc 216
>MGAP008CH10F.B mgap008cH10f.b LENGTH:521bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 521
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 535 ggatctgaagaacc 548
||||||||||||||
Sbjct: 103 ggatctgaagaacc 90
>GI3391942G gi3391942g LENGTH:805bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 805
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 gatgtactgggctt 141
||||||||||||||
Sbjct: 195 gatgtactgggctt 208
>GI3391909G gi3391909g LENGTH:743bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 743
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 450 aggcgtttttcggc 463
||||||||||||||
Sbjct: 102 aggcgtttttcggc 115
>GI3391768G gi3391768g LENGTH:792bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 792
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 cgttgctgaatttc 125
||||||||||||||
Sbjct: 413 cgttgctgaatttc 400
>GI3391763G gi3391763g LENGTH:748bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 748
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 379 gaattcgggtctgc 392
||||||||||||||
Sbjct: 556 gaattcgggtctgc 543
>GI14181593 gi14181593 LENGTH:669bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 669
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 251 tttggcgagcaggatctt 268
|||| |||||||||||||
Sbjct: 559 tttgccgagcaggatctt 576
>CL642CT722CN1487 cl642ct722cn1487 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:26; ESTS:gi2537286g,mgmy00
Length = 925
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 466 cctcaagtcaattg 479
||||||||||||||
Sbjct: 807 cctcaagtcaattg 820
>CL624CT702CN1457 cl624ct702cn1457 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:9; ESTS:gi3391393g,mgmy003
Length = 1457
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 626 caggctccggccca 639
||||||||||||||
Sbjct: 178 caggctccggccca 191
>CL1271CT1374CN2165 cl1271ct1374cn2165 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns001bC07f.b,m
Length = 575
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 275 ctcagtgctcttga 288
||||||||||||||
Sbjct: 252 ctcagtgctcttga 239
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 897
Number of Sequences: 4717
Number of extensions: 897
Number of successful extensions: 243
Number of sequences better than 10.0: 21
length of query: 653
length of database: 2,543,711
effective HSP length: 15
effective length of query: 638
effective length of database: 2,472,956
effective search space: 1577745928
effective search space used: 1577745928
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)