BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1605_B05_C0
9ZS5.seq
(388 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.436 Ncr_G_C2.436 224 4e-58
NCR_G_C2.418 Ncr_G_C2.418 92 4e-18
NCR_G_C2.523 Ncr_G_C2.523 34 0.72
NCR_G_C2.458 Ncr_G_C2.458 34 0.72
NCR_G_C2.216 Ncr_G_C2.216 34 0.72
NCR_G_C2.066 Ncr_G_C2.066 34 0.72
NCR_G_C2.037 Ncr_G_C2.037 34 0.72
NCR_G_C2.033 Ncr_G_C2.033 34 0.72
NCR_G_C2.539 Ncr_G_C2.539 32 2.8
NCR_G_C2.439 Ncr_G_C2.439 32 2.8
NCR_G_C2.431 Ncr_G_C2.431 32 2.8
NCR_G_C2.298 Ncr_G_C2.298 32 2.8
NCR_G_C2.219 Ncr_G_C2.219 32 2.8
NCR_G_C2.205 Ncr_G_C2.205 32 2.8
NCR_G_C2.187 Ncr_G_C2.187 32 2.8
NCR_G_C2.059 Ncr_G_C2.059 32 2.8
NCR_G_C2.046 Ncr_G_C2.046 32 2.8
NCR_G_C2.022_6 Ncr_G_C2.022_6.seq Continuation (6 of 6) of Ncr_G... 32 2.8
NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G... 32 2.8
NCR_G_C2.022_4 Ncr_G_C2.022_4.seq Continuation (4 of 6) of Ncr_G... 32 2.8
NCR_G_C2.013 Ncr_G_C2.013 32 2.8
>NCR_G_C2.436 Ncr_G_C2.436
Length = 76402
Score = 224 bits (113), Expect = 4e-58
Identities = 295/356 (82%)
Strand = Plus / Plus
Query: 5 ggtgtcaccaccctcgacatcgtccgtgccgagaccttcgttgctgagatcactggcaag 64
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 53712 ggtgtcaccaccctcgatattgtccgtgccgagaccttcgttgctgagattgctggcaat 53771
Query: 65 gccaacccccaggagctgaccatccccgtcattggtggtcactctggcgagactattgtt 124
||||||||||||||| |||||||||| ||||| ||||| |||||||| || |||
Sbjct: 53772 agcaacccccaggagctcgttgtccccgtcatcggtgggcactccggcgagaccatcgtt 53831
Query: 125 cccctcttcagcaaggcctctccttcagttcagatccccgacgacaagtacgatgctctc 184
|| ||||||||||||| || || || || ||||| ||||||||||||||||||||
Sbjct: 53832 cctctcttcagcaaggtgtccccctcggtcaccatccctgacgacaagtacgatgctctt 53891
Query: 185 gtaaaccgcattcagttcggcggtgacgaagttgtcaaggccaaggacggtgctggttcc 244
|| |||||| | |||||||| ||||| || || |||||||||||||| ||| || ||
Sbjct: 53892 gtcaaccgcgtccagttcggtggtgatgaggtcgtcaaggccaaggagggtctcggctct 53951
Query: 245 gccaccctgtccatggcctatgccggtttccgattcgccgagaaggttctccgtgccgtc 304
|||||||| |||||||| |||||||||| || ||||| |||||| | ||| |||| |
Sbjct: 53952 gccaccctctccatggcttatgccggttatcgcttcgctgagaagctcctcaaggccgcc 54011
Query: 305 aagggcgagaagggccttgttgagcccanctacgtctaccttcccggtgttcccgg 360
||||||| ||||||||||| ||||||| ||||||||| || |||||| |||||||
Sbjct: 54012 aagggcgccaagggccttgtcgagcccacctacgtctatctccccggtattcccgg 54067
>NCR_G_C2.418 Ncr_G_C2.418
Length = 47903
Score = 91.7 bits (46), Expect = 4e-18
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 197 cagttcggcggtgacgaagttgtcaaggccaaggacggtgctggttccgccaccctgtcc 256
|||||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||
Sbjct: 12265 cagttcggtggtgacgaggtcgtcaaggccaaggacggtgccggttccgccaccctctcc 12206
Query: 257 atggcc 262
||||||
Sbjct: 12205 atggcc 12200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 ggtgtcaccaccctcgacatcgtccg 30
|||||||||||||||||| |||||||
Sbjct: 12445 ggtgtcaccaccctcgacgtcgtccg 12420
>NCR_G_C2.523 Ncr_G_C2.523
Length = 130581
Score = 34.2 bits (17), Expect = 0.72
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 68 aacccccaggagctgaccatc 88
||||||| |||||||||||||
Sbjct: 68290 aaccccctggagctgaccatc 68310
>NCR_G_C2.458 Ncr_G_C2.458
Length = 32375
Score = 34.2 bits (17), Expect = 0.72
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 307 gggcgagaagggccttg 323
|||||||||||||||||
Sbjct: 17792 gggcgagaagggccttg 17776
>NCR_G_C2.216 Ncr_G_C2.216
Length = 48088
Score = 34.2 bits (17), Expect = 0.72
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10 caccaccctcgacatcg 26
|||||||||||||||||
Sbjct: 5561 caccaccctcgacatcg 5545
>NCR_G_C2.066 Ncr_G_C2.066
Length = 117949
Score = 34.2 bits (17), Expect = 0.72
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 31 tgccgagaccttcgttg 47
|||||||||||||||||
Sbjct: 30302 tgccgagaccttcgttg 30318
>NCR_G_C2.037 Ncr_G_C2.037
Length = 55136
Score = 34.2 bits (17), Expect = 0.72
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 221 aaggccaaggacggtgc 237
|||||||||||||||||
Sbjct: 26767 aaggccaaggacggtgc 26783
>NCR_G_C2.033 Ncr_G_C2.033
Length = 166617
Score = 34.2 bits (17), Expect = 0.72
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 126 ccctcttcagcaaggcctctc 146
||||||||| |||||||||||
Sbjct: 135666 ccctcttcatcaaggcctctc 135686
>NCR_G_C2.539 Ncr_G_C2.539
Length = 95985
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 10 caccaccctcgacatc 25
||||||||||||||||
Sbjct: 81897 caccaccctcgacatc 81912
>NCR_G_C2.439 Ncr_G_C2.439
Length = 63445
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 128 ctcttcagcaaggcct 143
||||||||||||||||
Sbjct: 53580 ctcttcagcaaggcct 53565
>NCR_G_C2.431 Ncr_G_C2.431
Length = 19195
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 agatcactggcaaggc 66
||||||||||||||||
Sbjct: 5394 agatcactggcaaggc 5409
>NCR_G_C2.298 Ncr_G_C2.298
Length = 253576
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 ctccttcagttcagat 159
||||||||||||||||
Sbjct: 67586 ctccttcagttcagat 67571
>NCR_G_C2.219 Ncr_G_C2.219
Length = 282514
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 274 ccgattcgccgagaag 289
||||||||||||||||
Sbjct: 90724 ccgattcgccgagaag 90709
>NCR_G_C2.205 Ncr_G_C2.205
Length = 197179
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2 tttggtgtcaccaccc 17
||||||||||||||||
Sbjct: 3678 tttggtgtcaccaccc 3693
>NCR_G_C2.187 Ncr_G_C2.187
Length = 100470
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 tcaaggccaaggacgg 234
||||||||||||||||
Sbjct: 34177 tcaaggccaaggacgg 34162
>NCR_G_C2.059 Ncr_G_C2.059
Length = 89435
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 caggagctgaccatcc 89
||||||||||||||||
Sbjct: 60925 caggagctgaccatcc 60940
>NCR_G_C2.046 Ncr_G_C2.046
Length = 62443
Score = 32.2 bits (16), Expect = 2.8
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 99 gtggtcactctggcgagact 118
|||||| |||||||||||||
Sbjct: 25621 gtggtctctctggcgagact 25602
>NCR_G_C2.022_6 Ncr_G_C2.022_6.seq Continuation (6 of 6) of
Ncr_G_C2.022 from base 500001
Length = 38348
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 ggcggtgacgaagttg 218
||||||||||||||||
Sbjct: 65 ggcggtgacgaagttg 80
>NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G_C2.022
from base 400001
Length = 110000
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 ggcggtgacgaagttg 218
||||||||||||||||
Sbjct: 100065 ggcggtgacgaagttg 100080
>NCR_G_C2.022_4 Ncr_G_C2.022_4.seq Continuation (4 of 6) of Ncr_G_C2.022
from base 300001
Length = 110000
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 218 gtcaaggccaaggacg 233
||||||||||||||||
Sbjct: 56191 gtcaaggccaaggacg 56176
>NCR_G_C2.013 Ncr_G_C2.013
Length = 121415
Score = 32.2 bits (16), Expect = 2.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 203 ggcggtgacgaagttg 218
||||||||||||||||
Sbjct: 63927 ggcggtgacgaagttg 63912
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8151
Number of Sequences: 995
Number of extensions: 8151
Number of successful extensions: 54
Number of sequences better than 10.0: 21
length of query: 388
length of database: 37,969,317
effective HSP length: 17
effective length of query: 371
effective length of database: 37,952,402
effective search space: 14080341142
effective search space used: 14080341142
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)