BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1605_B11_C2
1ZS5.seq
(473 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.227 Ncr_G_C2.227 34 0.88
NCR_G_C2.095 Ncr_G_C2.095 34 0.88
NCR_G_C2.717 Ncr_G_C2.717 32 3.5
NCR_G_C2.692 Ncr_G_C2.692 32 3.5
NCR_G_C2.577 Ncr_G_C2.577 32 3.5
NCR_G_C2.238 Ncr_G_C2.238 32 3.5
NCR_G_C2.216 Ncr_G_C2.216 32 3.5
NCR_G_C2.200 Ncr_G_C2.200 32 3.5
NCR_G_C2.057 Ncr_G_C2.057 32 3.5
>NCR_G_C2.227 Ncr_G_C2.227
Length = 73574
Score = 34.2 bits (17), Expect = 0.88
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 50 tgtactgcgatctgtta 66
|||||||||||||||||
Sbjct: 56686 tgtactgcgatctgtta 56670
>NCR_G_C2.095 Ncr_G_C2.095
Length = 82161
Score = 34.2 bits (17), Expect = 0.88
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 38 aagaaaccgacttgtac 54
|||||||||||||||||
Sbjct: 14826 aagaaaccgacttgtac 14810
>NCR_G_C2.717 Ncr_G_C2.717
Length = 57937
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 390 acctatcgacattgcc 405
||||||||||||||||
Sbjct: 3799 acctatcgacattgcc 3814
>NCR_G_C2.692 Ncr_G_C2.692
Length = 31530
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 257 cgaatatggccgagac 272
||||||||||||||||
Sbjct: 7954 cgaatatggccgagac 7969
>NCR_G_C2.577 Ncr_G_C2.577
Length = 63063
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 17 gaccatttccaaaaca 32
||||||||||||||||
Sbjct: 27645 gaccatttccaaaaca 27660
>NCR_G_C2.238 Ncr_G_C2.238
Length = 254242
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 236 agaaagaagggtgctt 251
||||||||||||||||
Sbjct: 106831 agaaagaagggtgctt 106846
>NCR_G_C2.216 Ncr_G_C2.216
Length = 48088
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 130 ttgcttgcgacacatg 145
||||||||||||||||
Sbjct: 34708 ttgcttgcgacacatg 34723
>NCR_G_C2.200 Ncr_G_C2.200
Length = 3978
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 164 ccgtcgtgcgattata 179
||||||||||||||||
Sbjct: 1119 ccgtcgtgcgattata 1134
>NCR_G_C2.057 Ncr_G_C2.057
Length = 66877
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4 atcgaaatatctcgac 19
||||||||||||||||
Sbjct: 44471 atcgaaatatctcgac 44456
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7004
Number of Sequences: 995
Number of extensions: 7004
Number of successful extensions: 9
Number of sequences better than 10.0: 9
length of query: 473
length of database: 37,969,317
effective HSP length: 17
effective length of query: 456
effective length of database: 37,952,402
effective search space: 17306295312
effective search space used: 17306295312
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)