TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1605_B11_C2
1ZS5.seq
(473 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.045 Ncr_G_C2.045 33 0.22
NCR_G_C2.588 Ncr_G_C2.588 30 1.1
NCR_G_C2.106 Ncr_G_C2.106 30 1.5
NCR_G_C2.753 Ncr_G_C2.753 30 1.5
NCR_G_C2.088 Ncr_G_C2.088 30 1.5
NCR_G_C2.275 Ncr_G_C2.275 29 2.1
NCR_G_C2.357 Ncr_G_C2.357 29 2.1
NCR_G_C2.681 Ncr_G_C2.681 29 2.8
NCR_G_C2.236 Ncr_G_C2.236 29 2.8
NCR_G_C2.146 Ncr_G_C2.146 29 2.8
NCR_G_C2.064 Ncr_G_C2.064 29 2.8
NCR_G_C2.105 Ncr_G_C2.105 29 2.8
NCR_G_C2.404 Ncr_G_C2.404 29 3.9
NCR_G_C2.380 Ncr_G_C2.380 29 3.9
NCR_G_C2.260 Ncr_G_C2.260 29 3.9
NCR_G_C2.367 Ncr_G_C2.367 28 5.4
NCR_G_C2.508 Ncr_G_C2.508 28 5.4
NCR_G_C2.237 Ncr_G_C2.237 28 5.4
NCR_G_C2.298 Ncr_G_C2.298 28 5.4
NCR_G_C2.802 Ncr_G_C2.802 25 6.3
NCR_G_C2.668 Ncr_G_C2.668 28 7.4
NCR_G_C2.437 Ncr_G_C2.437 28 7.4
NCR_G_C2.220 Ncr_G_C2.220 28 7.4
NCR_G_C2.750 Ncr_G_C2.750 28 7.4
NCR_G_C2.128 Ncr_G_C2.128 28 7.4
NCR_G_C2.586 Ncr_G_C2.586 28 7.4
NCR_G_C2.013 Ncr_G_C2.013 28 7.4
NCR_G_C2.160 Ncr_G_C2.160 28 7.4
NCR_G_C2.084 Ncr_G_C2.084 28 7.4
NCR_G_C2.557 Ncr_G_C2.557 28 7.4
NCR_G_C2.265 Ncr_G_C2.265 28 7.4
NCR_G_C2.058 Ncr_G_C2.058 28 7.4
NCR_G_C2.739 Ncr_G_C2.739 25 7.7
NCR_G_C2.222 Ncr_G_C2.222 26 8.0
>NCR_G_C2.045 Ncr_G_C2.045
Length = 107702
Score = 32.7 bits (65), Expect = 0.22
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2 / -1
Query: 341 VNLLSTCIHYLYASLRYLSTLPQSLFGSIR 430
V+ L+T +HYL R T+P S+ GS+R
Sbjct: 50864 VSGLTTNVHYLLLQARTSKTIPSSVLGSVR 50775
>NCR_G_C2.588 Ncr_G_C2.588
Length = 154785
Score = 30.4 bits (60), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (45%)
Frame = +1 / -1
Query: 52 YCDLLAALNNRGMLCCTGVSRKFSSSLLATHGADRCISVVR 174
Y LL NRG+ T R+ LL THG D+ +R
Sbjct: 125874 YASLLFLSTNRGLCVVTEDQREALLDLLLTHGHDKISPEIR 125752
Score = 27.6 bits (54), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +1 / +2
Query: 7 EISRPFPKQPEETDLYCDLLAALNNRGML 93
EISR FP P T ++C++ + + R +L
Sbjct: 28919 EISRLFPYAPFATCIWCNVASTIQTRLLL 29005
>NCR_G_C2.106 Ncr_G_C2.106
Length = 177512
Score = 29.9 bits (59), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 182 WYNRTTEMHLSAPCVASKLELNFRE 108
+YN + E H + PCVA L+FR+
Sbjct: 137795 YYNMSREPHKAGPCVAGLC*LSFRQ 137721
>NCR_G_C2.753 Ncr_G_C2.753
Length = 34058
Score = 29.9 bits (59), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / -1
Query: 32 NLKKPTCTAIC*LLSTIEACYVVPVFHGSSARVC 133
NL+K +C+ C T A P+F SS+ +C
Sbjct: 31496 NLEKFSCSYFCTSEMTYSAMRSSPIFRASSSSMC 31395
>NCR_G_C2.088 Ncr_G_C2.088
Length = 45573
Score = 29.9 bits (59), Expect = 1.5
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +2 / +2
Query: 38 KKPTCTAIC*LLSTIEACYVVPVFHGSSARVCLRHMERIDASPSCDYTKSFSRDRSSRIA 217
K C *L +I+ + FH ++C++ + + +S C S R R+ ++
Sbjct: 43181 KLALCIVAT*LAHSIDGSHDKDAFHQPEWQICVKETDMVGSSL*CKPDTSRLRARNWAVS 43360
Query: 218 GHVSV 232
G + +
Sbjct: 43361 GQIKI 43375
>NCR_G_C2.275 Ncr_G_C2.275
Length = 20683
Score = 29.5 bits (58), Expect = 2.1
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +2 / -1
Query: 299 LRLQSTSYVERETPVNLLSTCIHYLYASLRYLSTLP 406
LRL STS++ + L +C++ Y ++ ++ LP
Sbjct: 3769 LRLNSTSFIANRLSILLALSCLNSTYLTVSNIAQLP 3662
>NCR_G_C2.357 Ncr_G_C2.357
Length = 48218
Score = 29.5 bits (58), Expect = 2.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1 / +2
Query: 197 LERRTWYNRTTEMHLSAPCVASKLELNFRETP 102
L+RRTW PC+ S L+FR P
Sbjct: 44771 LQRRTWMRTALRNRRWVPCLLSGFLLSFRRWP 44866
>NCR_G_C2.681 Ncr_G_C2.681
Length = 124507
Score = 29.0 bits (57), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2 / -3
Query: 292 VKTVIQVSRPYSCLSTLLSKD*NMTRNSR*P 200
VKT++Q+S P+S L T SK +T R P
Sbjct: 32708 VKTLLQISAPFSSLVTRRSKTQRVTVPQRPP 32616
>NCR_G_C2.236 Ncr_G_C2.236
Length = 344103
Score = 29.0 bits (57), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2 / +1
Query: 116 SSARVCLRHMERIDASPSCDYTKSFSR 196
SSARV + + DA SCDY + R
Sbjct: 69397 SSARVFAFYQDHRDAGDSCDYGNQYKR 69477
>NCR_G_C2.146 Ncr_G_C2.146
Length = 38737
Score = 29.0 bits (57), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / +2
Query: 350 LSTCIHYLYASLRYLSTLPQSLF 418
LS+ YLY LRY LP S+F
Sbjct: 14408 LSSPSRYLYLPLRYFMPLPSSIF 14476
>NCR_G_C2.064 Ncr_G_C2.064
Length = 47747
Score = 29.0 bits (57), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1 / -2
Query: 116 FRETPVQHSMPRLLRAANRSQYKSVSSG 33
FR P+QH+MP LL +S+ + + G
Sbjct: 44722 FRHQPIQHTMPFLLCCHRKSKIRVFTHG 44639
>NCR_G_C2.105 Ncr_G_C2.105
Length = 33954
Score = 29.0 bits (57), Expect = 2.8
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = -1 / +2
Query: 185 TWYNRTTEMHLSAPCVASKLELNFRETPVQHSMP 84
TW N T +HL+ P + +FR T + P
Sbjct: 1922 TWINYTRNLHLAKPIANLRSRPSFRSTRARSDRP 2023
>NCR_G_C2.404 Ncr_G_C2.404
Length = 264766
Score = 28.6 bits (56), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = -1 / +3
Query: 146 PCVASKLELNFRETPVQHSMPRLLRAANRSQYKSVS 39
PC S +F E VQHS+P L+ S + +S
Sbjct: 160344 PCRPSFSAKSFTECDVQHSVPSLIATMRPSSFAILS 160451
Score = 27.6 bits (54), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +1 / +3
Query: 211 NCGSCFSP*KEGCLNTNM 264
NC SC SP K C NT +
Sbjct: 253584 NCPSCLSPNKTFCKNTKL 253637
>NCR_G_C2.380 Ncr_G_C2.380
Length = 179343
Score = 28.6 bits (56), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +1 / +2
Query: 340 SQSSIYLHTLPICLSKVPIDIAPKPIWID 426
+ S L L CLSK+ + ++PK W D
Sbjct: 68159 ADESARLEFLAACLSKMGLSLSPKAAWDD 68245
>NCR_G_C2.260 Ncr_G_C2.260
Length = 61881
Score = 28.6 bits (56), Expect = 3.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1 / +3
Query: 85 GMLCCTGVSRKFSSSLLATHGADRCISVV 171
G+ CC +S + + L THG+ +S+V
Sbjct: 25845 GITCCWSLSSQSAQLLFQTHGSINSLSIV 25931
>NCR_G_C2.367 Ncr_G_C2.367
Length = 88285
Score = 28.1 bits (55), Expect = 5.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1 / -3
Query: 67 AALNNRGMLCCTGVSRKFSSSLLATHGADRCIS 165
A L N GML GV + S+ H D CIS
Sbjct: 44492 AELKNLGMLLLPGVKQAVSAYRRRQHWLDGCIS 44394
>NCR_G_C2.508 Ncr_G_C2.508
Length = 105197
Score = 28.1 bits (55), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +3 / +2
Query: 156 MHLRRAIIPSPSLETGHLELRVMFQSLERRVL 251
+HL IPS + TG L L +MF + R L
Sbjct: 58133 IHLLDIFIPSSLVPTGQLRLLLMFPPVSRHQL 58228
>NCR_G_C2.237 Ncr_G_C2.237
Length = 91678
Score = 28.1 bits (55), Expect = 5.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 183 SPSLETGHLELRVMFQSLERRVL 251
S S+ TGHL++ V F LER++L
Sbjct: 86061 SRSM*TGHLDM*VRFALLERQIL 86129
Score = 28.1 bits (55), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +1 / -2
Query: 13 SRPFPKQPEETDLYCDL 63
S PFP + DLYCD+
Sbjct: 26106 STPFPPMNSQADLYCDV 26056
>NCR_G_C2.298 Ncr_G_C2.298
Length = 253576
Score = 28.1 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2 / +3
Query: 95 VVPVFHGSSARVCLRHMERIDASPSCDYTKS 187
+VP HG+ R C + + P+CD T+S
Sbjct: 56685 IVPTLHGT*PRPCTT*SWKSTSPPTCDPTQS 56777
>NCR_G_C2.802 Ncr_G_C2.802
Length = 37743
Score = 24.9 bits (48), Expect(2) = 6.3
Identities = 6/19 (31%), Positives = 12/19 (62%)
Frame = +1 / +3
Query: 7 EISRPFPKQPEETDLYCDL 63
E+ P+P+ P T ++C +
Sbjct: 8043 EVGAPYPRHPARTVVFCSV 8099
Score = 20.8 bits (39), Expect(2) = 6.3
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +3 / +1
Query: 63 VSCSQQSRHAMLYRCFT 113
+SCS QSR A L F+
Sbjct: 8080 LSCSVQSRSAFLITKFS 8130
>NCR_G_C2.668 Ncr_G_C2.668
Length = 78107
Score = 27.6 bits (54), Expect = 7.4
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +3 / -3
Query: 63 VSCSQQSRHAMLYRCFTEVQLEFACDTWS 149
V CS + HA+L + F V L + C +S
Sbjct: 33780 VFCSMDNLHAILLKLFARVILMYDCGVFS 33694
>NCR_G_C2.437 Ncr_G_C2.437
Length = 118197
Score = 27.6 bits (54), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2 / -1
Query: 107 FHGSSARVCLRHMERIDASPSCD 175
FH S R CL ++ I +PSC+
Sbjct: 100854 FHRLSVRTCLCSVDHIFTAPSCN 100786
>NCR_G_C2.220 Ncr_G_C2.220
Length = 142147
Score = 27.6 bits (54), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2 / +1
Query: 281 YCFDILLRLQSTSYVERET 337
YCFD+L ++ST Y+E T
Sbjct: 14914 YCFDLLSSVEST*YLEIHT 14970
>NCR_G_C2.750 Ncr_G_C2.750
Length = 24905
Score = 27.6 bits (54), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = +3 / -2
Query: 144 WSG*MHLRRAIIPSPSLETGHLELRVMFQSLERRVLKHE 260
W G MH +A PS+ + L++ +E+RVL +
Sbjct: 8686 WQGFMHPDQATSSLPSVTSDSLDVITALAHIEKRVLSRK 8570
>NCR_G_C2.128 Ncr_G_C2.128
Length = 227066
Score = 27.6 bits (54), Expect = 7.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2 / -3
Query: 164 PSCDYTKSFSRDRSSRIAGH 223
P+ SFS+DRSSR+A H
Sbjct: 67617 PNSRKALSFSKDRSSRVAQH 67558
>NCR_G_C2.586 Ncr_G_C2.586
Length = 49947
Score = 27.6 bits (54), Expect = 7.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 361 HTLPICLSKVPIDIAP 408
HTLP C S++P+ + P
Sbjct: 29430 HTLPFCCSRLPLALPP 29383
>NCR_G_C2.013 Ncr_G_C2.013
Length = 121415
Score = 27.6 bits (54), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1 / -3
Query: 334 DASQSSIYLHTLPICLSKVPI 396
DAS S+ H P+C KVPI
Sbjct: 52938 DASGLSLACHVAPLCPRKVPI 52876
>NCR_G_C2.160 Ncr_G_C2.160
Length = 71170
Score = 27.6 bits (54), Expect = 7.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1 / -1
Query: 346 SSIYLHTLPICLSKVPIDIAPKPIW 420
+S Y TL +C P + P P+W
Sbjct: 13288 TSWYRATLSVCCGISPTSLPPAPVW 13214
>NCR_G_C2.084 Ncr_G_C2.084
Length = 110311
Score = 27.6 bits (54), Expect = 7.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1 / -1
Query: 58 DLLAALNNRGMLCCTGVSRK 117
D++A + NRG CC+ SR+
Sbjct: 7123 DVVATMRNRGEFCCSRESRE 7064
>NCR_G_C2.557 Ncr_G_C2.557
Length = 84113
Score = 27.6 bits (54), Expect = 7.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1 / +2
Query: 298 TSPTEYFLRRTRDASQSSIYLHTLPICLSKVPIDIAPK 411
T P L +R ++ + ++LH P K +D+APK
Sbjct: 11096 TRPYHPVLWNSRFSASAKLWLHEAPRTARKSEMDLAPK 11209
>NCR_G_C2.265 Ncr_G_C2.265
Length = 91342
Score = 27.6 bits (54), Expect = 7.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1 / -1
Query: 352 IYLHTLPICLSKVPIDI 402
+YLHTLP C + P+ +
Sbjct: 85120 LYLHTLPTCYTTTPLPL 85070
>NCR_G_C2.058 Ncr_G_C2.058
Length = 62744
Score = 27.6 bits (54), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2 / +2
Query: 353 STCIHYLYASLRYLSTLPQSLFGSIR 430
STC+ YL+ + + +P S GS R
Sbjct: 22310 STCLDYLFEANHFFEEVPTSSIGSSR 22387
>NCR_G_C2.739 Ncr_G_C2.739
Length = 74477
Score = 25.3 bits (49), Expect(2) = 7.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2 / +1
Query: 386 RYLSTLPQSLFGSIRNTHVS 445
RYL T PQS+ SI + HV+
Sbjct: 31972 RYLPTSPQSISFSIGSFHVA 32031
Score = 19.8 bits (37), Expect(2) = 7.7
Identities = 7/16 (43%), Positives = 10/16 (61%)
Frame = +1 / +2
Query: 346 SSIYLHTLPICLSKVP 393
S ++ TLP C+S P
Sbjct: 31916 SMLHTSTLPCCIS*FP 31963
>NCR_G_C2.222 Ncr_G_C2.222
Length = 51141
Score = 25.8 bits (50), Expect(2) = 8.0
Identities = 15/37 (40%), Positives = 19/37 (50%)
Frame = +3 / -2
Query: 159 HLRRAIIPSPSLETGHLELRVMFQSLERRVLKHEYGR 269
H RRA SP L G R ++ +RRV + E GR
Sbjct: 12770 HSRRAHHWSPLLRDGFAPRRGGWKVADRRVCRPEKGR 12660
Score = 19.4 bits (36), Expect(2) = 8.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1 / -2
Query: 340 SQSSIYLHTLPICL 381
SQSS L T CL
Sbjct: 12587 SQSSTQLETQVACL 12546
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 44269968
Number of Sequences: 995
Number of extensions: 652097
Number of successful extensions: 29915
Number of sequences better than 10.0: 34
length of query: 157
length of database: 12,656,439
effective HSP length: 47
effective length of query: 110
effective length of database: 12,609,674
effective search space: 1387064140
effective search space used: 1387064140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)