BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1605_G06_M1
1ZS5.seq
(339 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.489 Ncr_G_C2.489 66 2e-10
NCR_G_C2.538 Ncr_G_C2.538 48 4e-05
NCR_G_C2.232 Ncr_G_C2.232 42 0.003
NCR_G_C2.715 Ncr_G_C2.715 36 0.16
NCR_G_C2.219 Ncr_G_C2.219 36 0.16
NCR_G_C2.053 Ncr_G_C2.053 36 0.16
NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G... 36 0.16
NCR_G_C2.339 Ncr_G_C2.339 34 0.62
NCR_G_C2.307 Ncr_G_C2.307 34 0.62
NCR_G_C2.128 Ncr_G_C2.128 34 0.62
NCR_G_C2.287 Ncr_G_C2.287 32 2.5
NCR_G_C2.258 Ncr_G_C2.258 32 2.5
NCR_G_C2.238 Ncr_G_C2.238 32 2.5
NCR_G_C2.236 Ncr_G_C2.236 32 2.5
NCR_G_C2.205 Ncr_G_C2.205 32 2.5
NCR_G_C2.106 Ncr_G_C2.106 32 2.5
NCR_G_C2.068 Ncr_G_C2.068 32 2.5
NCR_G_C2.033 Ncr_G_C2.033 32 2.5
NCR_G_C2.027 Ncr_G_C2.027 32 2.5
NCR_G_C2.023 Ncr_G_C2.023 32 2.5
NCR_G_C2.019 Ncr_G_C2.019 32 2.5
NCR_G_C2.763 Ncr_G_C2.763 30 9.7
NCR_G_C2.706 Ncr_G_C2.706 30 9.7
NCR_G_C2.681 Ncr_G_C2.681 30 9.7
NCR_G_C2.663 Ncr_G_C2.663 30 9.7
NCR_G_C2.642 Ncr_G_C2.642 30 9.7
NCR_G_C2.624 Ncr_G_C2.624 30 9.7
NCR_G_C2.585 Ncr_G_C2.585 30 9.7
NCR_G_C2.568 Ncr_G_C2.568 30 9.7
NCR_G_C2.564 Ncr_G_C2.564 30 9.7
NCR_G_C2.550 Ncr_G_C2.550 30 9.7
NCR_G_C2.509 Ncr_G_C2.509 30 9.7
NCR_G_C2.502 Ncr_G_C2.502 30 9.7
NCR_G_C2.497 Ncr_G_C2.497 30 9.7
NCR_G_C2.452 Ncr_G_C2.452 30 9.7
NCR_G_C2.438 Ncr_G_C2.438 30 9.7
NCR_G_C2.436 Ncr_G_C2.436 30 9.7
NCR_G_C2.344 Ncr_G_C2.344 30 9.7
NCR_G_C2.234 Ncr_G_C2.234 30 9.7
NCR_G_C2.118 Ncr_G_C2.118 30 9.7
NCR_G_C2.111 Ncr_G_C2.111 30 9.7
NCR_G_C2.109 Ncr_G_C2.109 30 9.7
NCR_G_C2.107 Ncr_G_C2.107 30 9.7
NCR_G_C2.095 Ncr_G_C2.095 30 9.7
NCR_G_C2.088 Ncr_G_C2.088 30 9.7
NCR_G_C2.083 Ncr_G_C2.083 30 9.7
NCR_G_C2.076 Ncr_G_C2.076 30 9.7
NCR_G_C2.070 Ncr_G_C2.070 30 9.7
>NCR_G_C2.489 Ncr_G_C2.489
Length = 72191
Score = 65.9 bits (33), Expect = 2e-10
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 172 cgctggatctttgtcggtggaaagggtggtgtcggaaagaccaccacttcttgctccctc 231
|||||||| || ||||| || |||||||||||||| ||||| || || || ||| ||
Sbjct: 36355 cgctggattttcgtcggcggcaagggtggtgtcggcaagacgacaacctcgtgcagtctg 36414
Query: 232 gccattcagctcgcaaaggtccgccgatctgtgcttctcatctcgaccgatcctgcccac 291
||||| ||||| || ||||||||||| || || | |||||||||||||| || ||||||
Sbjct: 36415 gccatccagctggccaaggtccgccgttcggtcttgctcatctcgaccgaccccgcccac 36474
Query: 292 aacctgtcagatgccttttcccagaaatttggcaaggaggc 332
|| || ||||||||| ||| || ||||||||||||||
Sbjct: 36475 aatctcagtgatgcctttagccaaaagtttggcaaggaggc 36515
>NCR_G_C2.538 Ncr_G_C2.538
Length = 60272
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 ccaccgccaaaatgtccaccgccc 109
||||||||||||||||||||||||
Sbjct: 55396 ccaccgccaaaatgtccaccgccc 55419
>NCR_G_C2.232 Ncr_G_C2.232
Length = 60784
Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 129 tctcgagccctctctccagtc 149
|||||||||||||||||||||
Sbjct: 49053 tctcgagccctctctccagtc 49073
>NCR_G_C2.715 Ncr_G_C2.715
Length = 49315
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 67 catcgctgccctttctcc 84
||||||||||||||||||
Sbjct: 27228 catcgctgccctttctcc 27211
>NCR_G_C2.219 Ncr_G_C2.219
Length = 282514
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 237 tcagctcgcaaaggtccg 254
||||||||||||||||||
Sbjct: 161144 tcagctcgcaaaggtccg 161127
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 ccaccacttcttgct 226
|||||||||||||||
Sbjct: 176849 ccaccacttcttgct 176835
>NCR_G_C2.053 Ncr_G_C2.053
Length = 105864
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 106 gccctcatctccaccgag 123
||||||||||||||||||
Sbjct: 92416 gccctcatctccaccgag 92433
>NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G_C2.042
from base 1
Length = 110000
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 89 ccgccaaaatgtccaccg 106
||||||||||||||||||
Sbjct: 51380 ccgccaaaatgtccaccg 51397
>NCR_G_C2.339 Ncr_G_C2.339
Length = 67925
Score = 34.2 bits (17), Expect = 0.62
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 79 ttctcctccaccgccaa 95
|||||||||||||||||
Sbjct: 32654 ttctcctccaccgccaa 32638
>NCR_G_C2.307 Ncr_G_C2.307
Length = 85225
Score = 34.2 bits (17), Expect = 0.62
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 104 ccgccctcatctccacc 120
|||||||||||||||||
Sbjct: 41472 ccgccctcatctccacc 41488
>NCR_G_C2.128 Ncr_G_C2.128
Length = 227066
Score = 34.2 bits (17), Expect = 0.62
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 75 ccctttctcctccaccg 91
|||||||||||||||||
Sbjct: 186581 ccctttctcctccaccg 186565
>NCR_G_C2.287 Ncr_G_C2.287
Length = 24895
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 15 gttattcgtcttctat 30
||||||||||||||||
Sbjct: 2033 gttattcgtcttctat 2018
>NCR_G_C2.258 Ncr_G_C2.258
Length = 28087
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 185 tcggtggaaagggtgg 200
||||||||||||||||
Sbjct: 15608 tcggtggaaagggtgg 15593
>NCR_G_C2.238 Ncr_G_C2.238
Length = 254242
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 272 tctcgaccgatcctgc 287
||||||||||||||||
Sbjct: 248575 tctcgaccgatcctgc 248560
>NCR_G_C2.236 Ncr_G_C2.236
Length = 344103
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 107 ccctcatctccaccga 122
||||||||||||||||
Sbjct: 337856 ccctcatctccaccga 337871
>NCR_G_C2.205 Ncr_G_C2.205
Length = 197179
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 199 ggtgtcggaaagacca 214
||||||||||||||||
Sbjct: 33996 ggtgtcggaaagacca 34011
>NCR_G_C2.106 Ncr_G_C2.106
Length = 177512
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 215 ccacttcttgctccct 230
||||||||||||||||
Sbjct: 29611 ccacttcttgctccct 29596
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 312 ccagaaatttggcaa 326
|||||||||||||||
Sbjct: 75475 ccagaaatttggcaa 75461
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 ttctcctccaccgcc 93
|||||||||||||||
Sbjct: 102656 ttctcctccaccgcc 102670
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 gaatccatctgtacc 64
|||||||||||||||
Sbjct: 92053 gaatccatctgtacc 92067
>NCR_G_C2.068 Ncr_G_C2.068
Length = 163893
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 201 tgtcggaaagaccacc 216
||||||||||||||||
Sbjct: 121703 tgtcggaaagaccacc 121718
>NCR_G_C2.033 Ncr_G_C2.033
Length = 166617
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2 tgaccagcttcgtgtt 17
||||||||||||||||
Sbjct: 99772 tgaccagcttcgtgtt 99787
>NCR_G_C2.027 Ncr_G_C2.027
Length = 84885
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 71 gctgccctttctcctc 86
||||||||||||||||
Sbjct: 26145 gctgccctttctcctc 26160
>NCR_G_C2.023 Ncr_G_C2.023
Length = 117328
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 88 accgccaaaatgtcca 103
||||||||||||||||
Sbjct: 40543 accgccaaaatgtcca 40528
>NCR_G_C2.019 Ncr_G_C2.019
Length = 128680
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 217 acttcttgctccctcg 232
||||||||||||||||
Sbjct: 67956 acttcttgctccctcg 67971
>NCR_G_C2.763 Ncr_G_C2.763
Length = 34778
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 ccaccgccctcatct 115
|||||||||||||||
Sbjct: 7232 ccaccgccctcatct 7218
>NCR_G_C2.706 Ncr_G_C2.706
Length = 27623
Score = 30.2 bits (15), Expect = 9.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 314 agaaatttggcaaggaggc 332
|||| ||||||||||||||
Sbjct: 25646 agaactttggcaaggaggc 25664
>NCR_G_C2.681 Ncr_G_C2.681
Length = 124507
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 caaaatgtccaccgc 107
|||||||||||||||
Sbjct: 41736 caaaatgtccaccgc 41750
>NCR_G_C2.663 Ncr_G_C2.663
Length = 35951
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 tgtcggtggaaaggg 197
|||||||||||||||
Sbjct: 23608 tgtcggtggaaaggg 23622
>NCR_G_C2.642 Ncr_G_C2.642
Length = 116778
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 ggtggaaagggtggt 201
|||||||||||||||
Sbjct: 15354 ggtggaaagggtggt 15340
>NCR_G_C2.624 Ncr_G_C2.624
Length = 145122
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 ggtccgccgatctgt 263
|||||||||||||||
Sbjct: 8365 ggtccgccgatctgt 8379
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 184 gtcggtggaaagggt 198
|||||||||||||||
Sbjct: 234136 gtcggtggaaagggt 234150
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 caccgccaaaatgtc 101
|||||||||||||||
Sbjct: 17226 caccgccaaaatgtc 17240
>NCR_G_C2.564 Ncr_G_C2.564
Length = 150940
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 tccctcgccattcag 240
|||||||||||||||
Sbjct: 2828 tccctcgccattcag 2842
>NCR_G_C2.550 Ncr_G_C2.550
Length = 52027
Score = 30.2 bits (15), Expect = 9.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 75 ccctttctcctccaccgcc 93
|||| ||||||||||||||
Sbjct: 14361 ccctctctcctccaccgcc 14379
>NCR_G_C2.509 Ncr_G_C2.509
Length = 86172
Score = 30.2 bits (15), Expect = 9.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 212 ccaccacttcttgctccct 230
||||| |||||||||||||
Sbjct: 11407 ccacctcttcttgctccct 11425
>NCR_G_C2.502 Ncr_G_C2.502
Length = 86916
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 ctttctcctccaccg 91
|||||||||||||||
Sbjct: 58994 ctttctcctccaccg 59008
>NCR_G_C2.497 Ncr_G_C2.497
Length = 192966
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 gtggtgtcggaaaga 211
|||||||||||||||
Sbjct: 9556 gtggtgtcggaaaga 9570
>NCR_G_C2.452 Ncr_G_C2.452
Length = 120796
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 gtcactccttgacca 161
|||||||||||||||
Sbjct: 31254 gtcactccttgacca 31240
>NCR_G_C2.438 Ncr_G_C2.438
Length = 62276
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 174 ctggatctttgtcgg 188
|||||||||||||||
Sbjct: 58664 ctggatctttgtcgg 58678
>NCR_G_C2.436 Ncr_G_C2.436
Length = 76402
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 cactccttgaccagc 163
|||||||||||||||
Sbjct: 74506 cactccttgaccagc 74492
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 gccaaaatgtccacc 105
|||||||||||||||
Sbjct: 92602 gccaaaatgtccacc 92588
>NCR_G_C2.234 Ncr_G_C2.234
Length = 40564
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 ccaccgccctcatct 115
|||||||||||||||
Sbjct: 10575 ccaccgccctcatct 10561
>NCR_G_C2.118 Ncr_G_C2.118
Length = 15022
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 gaccaccacttcttg 224
|||||||||||||||
Sbjct: 6624 gaccaccacttcttg 6610
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 ttctcctccaccgcc 93
|||||||||||||||
Sbjct: 182822 ttctcctccaccgcc 182836
>NCR_G_C2.109 Ncr_G_C2.109
Length = 10812
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 297 gtcagatgccttttc 311
|||||||||||||||
Sbjct: 8461 gtcagatgccttttc 8447
>NCR_G_C2.107 Ncr_G_C2.107
Length = 97891
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 atgtccaccgccctc 111
|||||||||||||||
Sbjct: 94595 atgtccaccgccctc 94581
>NCR_G_C2.095 Ncr_G_C2.095
Length = 82161
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 gccaaaatgtccacc 105
|||||||||||||||
Sbjct: 12117 gccaaaatgtccacc 12103
>NCR_G_C2.088 Ncr_G_C2.088
Length = 45573
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 ctcatcgctgccctt 79
|||||||||||||||
Sbjct: 2801 ctcatcgctgccctt 2815
>NCR_G_C2.083 Ncr_G_C2.083
Length = 123429
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 ctcctccaccgccaa 95
|||||||||||||||
Sbjct: 70776 ctcctccaccgccaa 70790
>NCR_G_C2.076 Ncr_G_C2.076
Length = 241344
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 186 cggtggaaagggtgg 200
|||||||||||||||
Sbjct: 163562 cggtggaaagggtgg 163576
>NCR_G_C2.070 Ncr_G_C2.070
Length = 89843
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 ggtggaaagggtggt 201
|||||||||||||||
Sbjct: 37071 ggtggaaagggtggt 37085
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7548
Number of Sequences: 995
Number of extensions: 7548
Number of successful extensions: 54
Number of sequences better than 10.0: 48
length of query: 339
length of database: 37,969,317
effective HSP length: 16
effective length of query: 323
effective length of database: 37,953,397
effective search space: 12258947231
effective search space used: 12258947231
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)