BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1606_A03_A0
6ZS5.seq
(563 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.344 Ncr_G_C2.344 40 0.017
NCR_G_C2.416 Ncr_G_C2.416 34 1.1
NCR_G_C2.219 Ncr_G_C2.219 34 1.1
NCR_G_C2.847 Ncr_G_C2.847 32 4.2
NCR_G_C2.615 Ncr_G_C2.615 32 4.2
NCR_G_C2.585 Ncr_G_C2.585 32 4.2
NCR_G_C2.568 Ncr_G_C2.568 32 4.2
NCR_G_C2.546 Ncr_G_C2.546 32 4.2
NCR_G_C2.538 Ncr_G_C2.538 32 4.2
NCR_G_C2.507 Ncr_G_C2.507 32 4.2
NCR_G_C2.502 Ncr_G_C2.502 32 4.2
NCR_G_C2.497 Ncr_G_C2.497 32 4.2
NCR_G_C2.423 Ncr_G_C2.423 32 4.2
NCR_G_C2.322 Ncr_G_C2.322 32 4.2
NCR_G_C2.175 Ncr_G_C2.175 32 4.2
NCR_G_C2.128 Ncr_G_C2.128 32 4.2
NCR_G_C2.107 Ncr_G_C2.107 32 4.2
NCR_G_C2.106 Ncr_G_C2.106 32 4.2
NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G... 32 4.2
NCR_G_C2.034 Ncr_G_C2.034 32 4.2
NCR_G_C2.010 Ncr_G_C2.010 32 4.2
NCR_G_C2.005 Ncr_G_C2.005 32 4.2
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 ctggcaagatgccaacggtc 35
||||||||||||||||||||
Sbjct: 87984 ctggcaagatgccaacggtc 88003
>NCR_G_C2.416 Ncr_G_C2.416
Length = 188447
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 109 cgaggttggtggtttggccgc 129
|||||||| ||||||||||||
Sbjct: 24015 cgaggttgatggtttggccgc 23995
>NCR_G_C2.219 Ncr_G_C2.219
Length = 282514
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 216 cccaagctgcggccttc 232
|||||||||||||||||
Sbjct: 192887 cccaagctgcggccttc 192871
>NCR_G_C2.847 Ncr_G_C2.847
Length = 44665
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 7 cgtgggttcctggcaa 22
||||||||||||||||
Sbjct: 25736 cgtgggttcctggcaa 25721
>NCR_G_C2.615 Ncr_G_C2.615
Length = 130067
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 359 gagaactctgtcaact 374
||||||||||||||||
Sbjct: 44851 gagaactctgtcaact 44866
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 226 ggccttcatccagtcc 241
||||||||||||||||
Sbjct: 144907 ggccttcatccagtcc 144922
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 33 gtcgctctggtctcga 48
||||||||||||||||
Sbjct: 79298 gtcgctctggtctcga 79283
>NCR_G_C2.546 Ncr_G_C2.546
Length = 112644
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 177 cccagcttctccaagc 192
||||||||||||||||
Sbjct: 30536 cccagcttctccaagc 30551
>NCR_G_C2.538 Ncr_G_C2.538
Length = 60272
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 450 cacaaacacaggtcaa 465
||||||||||||||||
Sbjct: 38322 cacaaacacaggtcaa 38307
>NCR_G_C2.507 Ncr_G_C2.507
Length = 196904
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 327 gtggcctgcaggttgt 342
||||||||||||||||
Sbjct: 123143 gtggcctgcaggttgt 123158
>NCR_G_C2.502 Ncr_G_C2.502
Length = 86916
Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 255 ttgctcgtctcactctttcc 274
|||||||||||||| |||||
Sbjct: 55331 ttgctcgtctcactgtttcc 55350
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 450 cacaaacacaggtcaa 465
||||||||||||||||
Sbjct: 66785 cacaaacacaggtcaa 66770
>NCR_G_C2.497 Ncr_G_C2.497
Length = 192966
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 gagaaggctggccagg 155
||||||||||||||||
Sbjct: 48347 gagaaggctggccagg 48332
>NCR_G_C2.423 Ncr_G_C2.423
Length = 97362
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 112 ggttggtggtttggcc 127
||||||||||||||||
Sbjct: 56096 ggttggtggtttggcc 56081
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 ctggcaagatgccaac 31
||||||||||||||||
Sbjct: 58638 ctggcaagatgccaac 58623
>NCR_G_C2.175 Ncr_G_C2.175
Length = 57986
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 361 gaactctgtcaacttt 376
||||||||||||||||
Sbjct: 57732 gaactctgtcaacttt 57747
>NCR_G_C2.128 Ncr_G_C2.128
Length = 227066
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 259 tcgtctcactctttcc 274
||||||||||||||||
Sbjct: 207685 tcgtctcactctttcc 207670
>NCR_G_C2.107 Ncr_G_C2.107
Length = 97891
Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 351 agtggctagagaactctgtc 370
|||||||| |||||||||||
Sbjct: 86536 agtggctatagaactctgtc 86517
>NCR_G_C2.106 Ncr_G_C2.106
Length = 177512
Score = 32.2 bits (16), Expect = 4.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 525 agaatcccgaccagtacacc 544
|||||||||||||| |||||
Sbjct: 54852 agaatcccgaccagaacacc 54871
>NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G_C2.042
from base 300001
Length = 110000
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 213 ctgcccaagctgcggc 228
||||||||||||||||
Sbjct: 86973 ctgcccaagctgcggc 86958
>NCR_G_C2.034 Ncr_G_C2.034
Length = 62480
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 428 tccctcaacgaccctc 443
||||||||||||||||
Sbjct: 14839 tccctcaacgaccctc 14854
>NCR_G_C2.010 Ncr_G_C2.010
Length = 27287
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 aaggctggccaggagc 158
||||||||||||||||
Sbjct: 18027 aaggctggccaggagc 18042
>NCR_G_C2.005 Ncr_G_C2.005
Length = 16945
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 198 ctaacagacttgcctc 213
||||||||||||||||
Sbjct: 2985 ctaacagacttgcctc 2970
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10513
Number of Sequences: 995
Number of extensions: 10513
Number of successful extensions: 23
Number of sequences better than 10.0: 22
length of query: 563
length of database: 37,969,317
effective HSP length: 17
effective length of query: 546
effective length of database: 37,952,402
effective search space: 20722011492
effective search space used: 20722011492
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)