BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1606_E02_I0
4ZS5.seq
(395 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.296 Ncr_G_C2.296 38 0.047
NCR_G_C2.353 Ncr_G_C2.353 36 0.18
NCR_G_C2.714 Ncr_G_C2.714 34 0.73
NCR_G_C2.509 Ncr_G_C2.509 34 0.73
NCR_G_C2.361 Ncr_G_C2.361 34 0.73
NCR_G_C2.343 Ncr_G_C2.343 34 0.73
NCR_G_C2.168 Ncr_G_C2.168 34 0.73
NCR_G_C2.023 Ncr_G_C2.023 34 0.73
NCR_G_C2.440 Ncr_G_C2.440 32 2.9
NCR_G_C2.436 Ncr_G_C2.436 32 2.9
NCR_G_C2.407 Ncr_G_C2.407 32 2.9
NCR_G_C2.394 Ncr_G_C2.394 32 2.9
NCR_G_C2.322 Ncr_G_C2.322 32 2.9
NCR_G_C2.203 Ncr_G_C2.203 32 2.9
NCR_G_C2.086 Ncr_G_C2.086 32 2.9
NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G... 32 2.9
>NCR_G_C2.296 Ncr_G_C2.296
Length = 137551
Score = 38.2 bits (19), Expect = 0.047
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 106 gtgcaggtgcatatgcaaatgca 128
|||||||||||||||||| ||||
Sbjct: 120212 gtgcaggtgcatatgcaactgca 120234
>NCR_G_C2.353 Ncr_G_C2.353
Length = 33194
Score = 36.2 bits (18), Expect = 0.18
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 49 caaggacaacctcaagga 66
||||||||||||||||||
Sbjct: 15405 caaggacaacctcaagga 15422
>NCR_G_C2.714 Ncr_G_C2.714
Length = 49289
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 159 agtccaaggagtcaaag 175
|||||||||||||||||
Sbjct: 29749 agtccaaggagtcaaag 29733
>NCR_G_C2.509 Ncr_G_C2.509
Length = 86172
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 316 gctactgtaggacccga 332
|||||||||||||||||
Sbjct: 58395 gctactgtaggacccga 58411
>NCR_G_C2.361 Ncr_G_C2.361
Length = 45448
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 38 aaggaggaactcaagga 54
|||||||||||||||||
Sbjct: 30599 aaggaggaactcaagga 30583
>NCR_G_C2.343 Ncr_G_C2.343
Length = 142167
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 44 gaactcaaggacaacct 60
|||||||||||||||||
Sbjct: 129340 gaactcaaggacaacct 129356
>NCR_G_C2.168 Ncr_G_C2.168
Length = 28005
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 139 caagaagaagtcaaagg 155
|||||||||||||||||
Sbjct: 4292 caagaagaagtcaaagg 4276
>NCR_G_C2.023 Ncr_G_C2.023
Length = 117328
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 140 aagaagaagtcaaagga 156
|||||||||||||||||
Sbjct: 26162 aagaagaagtcaaagga 26178
>NCR_G_C2.440 Ncr_G_C2.440
Length = 156136
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 353 tttccaatactcgtct 368
||||||||||||||||
Sbjct: 41015 tttccaatactcgtct 41000
>NCR_G_C2.436 Ncr_G_C2.436
Length = 76402
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 373 cagcgtatttatcctt 388
||||||||||||||||
Sbjct: 5706 cagcgtatttatcctt 5721
>NCR_G_C2.407 Ncr_G_C2.407
Length = 67558
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 aaggacaacctcaagg 65
||||||||||||||||
Sbjct: 58812 aaggacaacctcaagg 58827
>NCR_G_C2.394 Ncr_G_C2.394
Length = 74819
Score = 32.2 bits (16), Expect = 2.9
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 152 aaggatgagtccaaggagtcaaag 175
||||||| ||| ||||||||||||
Sbjct: 69900 aaggatgtgtcgaaggagtcaaag 69923
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 173 aagatgaagtccaagg 188
||||||||||||||||
Sbjct: 74025 aagatgaagtccaagg 74040
>NCR_G_C2.203 Ncr_G_C2.203
Length = 128723
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 137 ttcaagaagaagtcaa 152
||||||||||||||||
Sbjct: 64012 ttcaagaagaagtcaa 63997
>NCR_G_C2.086 Ncr_G_C2.086
Length = 127572
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 atatgcaaatgcaagg 131
||||||||||||||||
Sbjct: 111937 atatgcaaatgcaagg 111952
>NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G_C2.042
from base 300001
Length = 110000
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 67 cgaaaccaaggacgaa 82
||||||||||||||||
Sbjct: 12367 cgaaaccaaggacgaa 12382
Score = 32.2 bits (16), Expect = 2.9
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 77 gacgaacccaagacagattc 96
||||||||||||||| ||||
Sbjct: 26452 gacgaacccaagacacattc 26433
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7647
Number of Sequences: 995
Number of extensions: 7647
Number of successful extensions: 51
Number of sequences better than 10.0: 16
length of query: 395
length of database: 37,969,317
effective HSP length: 17
effective length of query: 378
effective length of database: 37,952,402
effective search space: 14346007956
effective search space used: 14346007956
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)