BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1606_F04_K0
8ZS5.seq
(453 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.690 Ncr_G_C2.690 32 3.3
NCR_G_C2.657 Ncr_G_C2.657 32 3.3
NCR_G_C2.646 Ncr_G_C2.646 32 3.3
NCR_G_C2.564 Ncr_G_C2.564 32 3.3
NCR_G_C2.508 Ncr_G_C2.508 32 3.3
NCR_G_C2.488 Ncr_G_C2.488 32 3.3
NCR_G_C2.458 Ncr_G_C2.458 32 3.3
NCR_G_C2.404 Ncr_G_C2.404 32 3.3
NCR_G_C2.403 Ncr_G_C2.403 32 3.3
NCR_G_C2.329 Ncr_G_C2.329 32 3.3
NCR_G_C2.273 Ncr_G_C2.273 32 3.3
NCR_G_C2.129 Ncr_G_C2.129 32 3.3
NCR_G_C2.067 Ncr_G_C2.067 32 3.3
NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G... 32 3.3
>NCR_G_C2.690 Ncr_G_C2.690
Length = 112273
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 109 cgtggaggtgcagctt 124
||||||||||||||||
Sbjct: 58283 cgtggaggtgcagctt 58298
>NCR_G_C2.657 Ncr_G_C2.657
Length = 44760
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 387 ctttggtgtgatgtgg 402
||||||||||||||||
Sbjct: 38710 ctttggtgtgatgtgg 38725
>NCR_G_C2.646 Ncr_G_C2.646
Length = 41756
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 387 ctttggtgtgatgtgg 402
||||||||||||||||
Sbjct: 20364 ctttggtgtgatgtgg 20379
>NCR_G_C2.564 Ncr_G_C2.564
Length = 150940
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 328 cggtcgaggtcaagag 343
||||||||||||||||
Sbjct: 36142 cggtcgaggtcaagag 36157
>NCR_G_C2.508 Ncr_G_C2.508
Length = 105197
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 190 aggtggaagcggtggt 205
||||||||||||||||
Sbjct: 37165 aggtggaagcggtggt 37150
>NCR_G_C2.488 Ncr_G_C2.488
Length = 91443
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 305 acctctttctgcacgg 320
||||||||||||||||
Sbjct: 64215 acctctttctgcacgg 64230
>NCR_G_C2.458 Ncr_G_C2.458
Length = 32375
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 gctgttctggtgatgc 176
||||||||||||||||
Sbjct: 10421 gctgttctggtgatgc 10406
>NCR_G_C2.404 Ncr_G_C2.404
Length = 264766
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 gcagctgttctggtga 173
||||||||||||||||
Sbjct: 120771 gcagctgttctggtga 120786
>NCR_G_C2.403 Ncr_G_C2.403
Length = 165442
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 174 tgcaagagaagcaagc 189
||||||||||||||||
Sbjct: 54495 tgcaagagaagcaagc 54510
>NCR_G_C2.329 Ncr_G_C2.329
Length = 53959
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 291 tttgtgaatatgggac 306
||||||||||||||||
Sbjct: 8293 tttgtgaatatgggac 8308
>NCR_G_C2.273 Ncr_G_C2.273
Length = 82197
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 392 gtgtgatgtggagagg 407
||||||||||||||||
Sbjct: 10585 gtgtgatgtggagagg 10570
>NCR_G_C2.129 Ncr_G_C2.129
Length = 50015
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 192 gtggaagcggtggtga 207
||||||||||||||||
Sbjct: 40032 gtggaagcggtggtga 40017
>NCR_G_C2.067 Ncr_G_C2.067
Length = 49858
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 387 ctttggtgtgatgtgg 402
||||||||||||||||
Sbjct: 47045 ctttggtgtgatgtgg 47030
>NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G_C2.022
from base 400001
Length = 110000
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 381 catacgctttggtgtg 396
||||||||||||||||
Sbjct: 37907 catacgctttggtgtg 37892
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9380
Number of Sequences: 995
Number of extensions: 9380
Number of successful extensions: 14
Number of sequences better than 10.0: 14
length of query: 453
length of database: 37,969,317
effective HSP length: 17
effective length of query: 436
effective length of database: 37,952,402
effective search space: 16547247272
effective search space used: 16547247272
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)