BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1606_F11_K2
2ZS5.seq
(457 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.647 Ncr_G_C2.647 32 3.4
NCR_G_C2.391 Ncr_G_C2.391 32 3.4
NCR_G_C2.201 Ncr_G_C2.201 32 3.4
NCR_G_C2.111 Ncr_G_C2.111 32 3.4
NCR_G_C2.110 Ncr_G_C2.110 32 3.4
NCR_G_C2.083 Ncr_G_C2.083 32 3.4
NCR_G_C2.020 Ncr_G_C2.020 32 3.4
>NCR_G_C2.647 Ncr_G_C2.647
Length = 70271
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 355 cgaagatgaaattgtc 370
||||||||||||||||
Sbjct: 1320 cgaagatgaaattgtc 1305
>NCR_G_C2.391 Ncr_G_C2.391
Length = 68325
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 18 aatggcaacggagcct 33
||||||||||||||||
Sbjct: 25678 aatggcaacggagcct 25693
>NCR_G_C2.201 Ncr_G_C2.201
Length = 19963
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 348 gtctctccgaagatga 363
||||||||||||||||
Sbjct: 14364 gtctctccgaagatga 14349
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 agggctgaagatgtgc 76
||||||||||||||||
Sbjct: 9348 agggctgaagatgtgc 9363
>NCR_G_C2.110 Ncr_G_C2.110
Length = 102633
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 256 cgttacgagccgagtatgcg 275
|||||||||||||| |||||
Sbjct: 31245 cgttacgagccgaggatgcg 31226
>NCR_G_C2.083 Ncr_G_C2.083
Length = 123429
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 408 gtcttgatgagatccg 423
||||||||||||||||
Sbjct: 87572 gtcttgatgagatccg 87557
>NCR_G_C2.020 Ncr_G_C2.020
Length = 66556
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 399 aactcatatgtcttga 414
||||||||||||||||
Sbjct: 31181 aactcatatgtcttga 31166
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7098
Number of Sequences: 995
Number of extensions: 7098
Number of successful extensions: 7
Number of sequences better than 10.0: 7
length of query: 457
length of database: 37,969,317
effective HSP length: 17
effective length of query: 440
effective length of database: 37,952,402
effective search space: 16699056880
effective search space used: 16699056880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)