BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1606_G01_M0
2ZS5.seq
(463 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.042_3 Ncr_G_C2.042_3.seq Continuation (3 of 6) of Ncr_G... 36 0.22
NCR_G_C2.163 Ncr_G_C2.163 34 0.86
NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G... 34 0.86
NCR_G_C2.017 Ncr_G_C2.017 34 0.86
NCR_G_C2.013 Ncr_G_C2.013 34 0.86
NCR_G_C2.702 Ncr_G_C2.702 32 3.4
NCR_G_C2.681 Ncr_G_C2.681 32 3.4
NCR_G_C2.570 Ncr_G_C2.570 32 3.4
NCR_G_C2.453 Ncr_G_C2.453 32 3.4
NCR_G_C2.359 Ncr_G_C2.359 32 3.4
NCR_G_C2.309 Ncr_G_C2.309 32 3.4
NCR_G_C2.307 Ncr_G_C2.307 32 3.4
NCR_G_C2.296 Ncr_G_C2.296 32 3.4
NCR_G_C2.273 Ncr_G_C2.273 32 3.4
NCR_G_C2.249 Ncr_G_C2.249 32 3.4
NCR_G_C2.242 Ncr_G_C2.242 32 3.4
NCR_G_C2.208 Ncr_G_C2.208 32 3.4
NCR_G_C2.107 Ncr_G_C2.107 32 3.4
NCR_G_C2.076 Ncr_G_C2.076 32 3.4
NCR_G_C2.055 Ncr_G_C2.055 32 3.4
NCR_G_C2.045 Ncr_G_C2.045 32 3.4
>NCR_G_C2.042_3 Ncr_G_C2.042_3.seq Continuation (3 of 6) of Ncr_G_C2.042
from base 200001
Length = 110000
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 172 gccaaggagaaggctgct 189
||||||||||||||||||
Sbjct: 96622 gccaaggagaaggctgct 96605
>NCR_G_C2.163 Ncr_G_C2.163
Length = 52618
Score = 34.2 bits (17), Expect = 0.86
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 174 caaggagaaggctgcttacaa 194
|||||||||||||| ||||||
Sbjct: 42693 caaggagaaggctgtttacaa 42713
>NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G_C2.042
from base 1
Length = 110000
Score = 34.2 bits (17), Expect = 0.86
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 132 cgagctcaacggcgtca 148
|||||||||||||||||
Sbjct: 46220 cgagctcaacggcgtca 46236
>NCR_G_C2.017 Ncr_G_C2.017
Length = 86020
Score = 34.2 bits (17), Expect = 0.86
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 caaggacgaggaggctg 73
|||||||||||||||||
Sbjct: 70846 caaggacgaggaggctg 70830
>NCR_G_C2.013 Ncr_G_C2.013
Length = 121415
Score = 34.2 bits (17), Expect = 0.86
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 135 gctcaacggcgtcaaga 151
|||||||||||||||||
Sbjct: 17809 gctcaacggcgtcaaga 17793
>NCR_G_C2.702 Ncr_G_C2.702
Length = 26965
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 ctgctgctcgcgctgc 173
||||||||||||||||
Sbjct: 10845 ctgctgctcgcgctgc 10860
>NCR_G_C2.681 Ncr_G_C2.681
Length = 124507
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 44 ccaacatccacctcaa 59
||||||||||||||||
Sbjct: 114328 ccaacatccacctcaa 114313
>NCR_G_C2.570 Ncr_G_C2.570
Length = 65061
Score = 32.2 bits (16), Expect = 3.4
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 111 caacgatggcgccattacccgcgagctc 138
||||| || |||||| ||||||||||||
Sbjct: 11868 caacggtgccgccatcacccgcgagctc 11895
>NCR_G_C2.453 Ncr_G_C2.453
Length = 52404
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 319 tgacatgacatgacaa 334
||||||||||||||||
Sbjct: 41216 tgacatgacatgacaa 41201
>NCR_G_C2.359 Ncr_G_C2.359
Length = 41101
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 138 caacggcgtcaagaccaagg 157
||||||||||||| ||||||
Sbjct: 2058 caacggcgtcaagcccaagg 2077
>NCR_G_C2.309 Ncr_G_C2.309
Length = 70740
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 44 ccaacatccacctcaa 59
||||||||||||||||
Sbjct: 772 ccaacatccacctcaa 757
>NCR_G_C2.307 Ncr_G_C2.307
Length = 85225
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 319 tgacatgacatgacaa 334
||||||||||||||||
Sbjct: 8131 tgacatgacatgacaa 8146
>NCR_G_C2.296 Ncr_G_C2.296
Length = 137551
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 61 gacgaggaggctgctg 76
||||||||||||||||
Sbjct: 116022 gacgaggaggctgctg 116007
>NCR_G_C2.273 Ncr_G_C2.273
Length = 82197
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 52 cacctcaaggacgagg 67
||||||||||||||||
Sbjct: 69626 cacctcaaggacgagg 69611
>NCR_G_C2.249 Ncr_G_C2.249
Length = 18606
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 227 aggcatcacagggaaa 242
||||||||||||||||
Sbjct: 3892 aggcatcacagggaaa 3907
>NCR_G_C2.242 Ncr_G_C2.242
Length = 30828
Score = 32.2 bits (16), Expect = 3.4
Identities = 31/36 (86%)
Strand = Plus / Plus
Query: 91 gaggccaacaagctcgcgcccaacgatggcgccatt 126
|||||||| ||||| ||||| | ||||||||||||
Sbjct: 16279 gaggccaagaagctagcgcctgaagatggcgccatt 16314
>NCR_G_C2.208 Ncr_G_C2.208
Length = 202230
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 60 ggacgaggaggctgct 75
||||||||||||||||
Sbjct: 83872 ggacgaggaggctgct 83887
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 413 gctgaatgagatacca 428
||||||||||||||||
Sbjct: 193427 gctgaatgagatacca 193412
>NCR_G_C2.107 Ncr_G_C2.107
Length = 97891
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 47 acatccacctcaagga 62
||||||||||||||||
Sbjct: 66844 acatccacctcaagga 66829
>NCR_G_C2.076 Ncr_G_C2.076
Length = 241344
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gccaaggagaaggctg 187
||||||||||||||||
Sbjct: 190001 gccaaggagaaggctg 189986
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gccaaggagaaggctg 187
||||||||||||||||
Sbjct: 189893 gccaaggagaaggctg 189878
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gccaaggagaaggctg 187
||||||||||||||||
Sbjct: 189947 gccaaggagaaggctg 189932
>NCR_G_C2.055 Ncr_G_C2.055
Length = 79879
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 96 caacaagctcgcgccc 111
||||||||||||||||
Sbjct: 16021 caacaagctcgcgccc 16006
>NCR_G_C2.045 Ncr_G_C2.045
Length = 107702
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 42 tgccaacatccacctc 57
||||||||||||||||
Sbjct: 63144 tgccaacatccacctc 63159
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9427
Number of Sequences: 995
Number of extensions: 9427
Number of successful extensions: 24
Number of sequences better than 10.0: 21
length of query: 463
length of database: 37,969,317
effective HSP length: 17
effective length of query: 446
effective length of database: 37,952,402
effective search space: 16926771292
effective search space used: 16926771292
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)