BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_A05_B0
9ZS5.seq
(357 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.528 Ncr_G_C2.528 38 0.042
NCR_G_C2.086 Ncr_G_C2.086 36 0.17
NCR_G_C2.769 Ncr_G_C2.769 34 0.66
NCR_G_C2.103 Ncr_G_C2.103 34 0.66
NCR_G_C2.847 Ncr_G_C2.847 32 2.6
NCR_G_C2.763 Ncr_G_C2.763 32 2.6
NCR_G_C2.577 Ncr_G_C2.577 32 2.6
NCR_G_C2.569 Ncr_G_C2.569 32 2.6
NCR_G_C2.507 Ncr_G_C2.507 32 2.6
NCR_G_C2.404 Ncr_G_C2.404 32 2.6
NCR_G_C2.322 Ncr_G_C2.322 32 2.6
NCR_G_C2.283 Ncr_G_C2.283 32 2.6
NCR_G_C2.271 Ncr_G_C2.271 32 2.6
NCR_G_C2.147 Ncr_G_C2.147 32 2.6
NCR_G_C2.041 Ncr_G_C2.041 32 2.6
NCR_G_C2.021 Ncr_G_C2.021 32 2.6
>NCR_G_C2.528 Ncr_G_C2.528
Length = 28156
Score = 38.2 bits (19), Expect = 0.042
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 94 tggtgggaggtgatgctgatcgcctacactcagga 128
||||||||||||||| |||| || ||||| |||||
Sbjct: 26743 tggtgggaggtgatgttgattgcgtacacgcagga 26709
>NCR_G_C2.086 Ncr_G_C2.086
Length = 127572
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 74 aggtcaatgaccaagagg 91
||||||||||||||||||
Sbjct: 119299 aggtcaatgaccaagagg 119282
>NCR_G_C2.769 Ncr_G_C2.769
Length = 41985
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 agtatgctgagaagtca 210
|||||||||||||||||
Sbjct: 7934 agtatgctgagaagtca 7950
>NCR_G_C2.103 Ncr_G_C2.103
Length = 50668
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 262 atcgagaagattgttga 278
|||||||||||||||||
Sbjct: 42424 atcgagaagattgttga 42440
>NCR_G_C2.847 Ncr_G_C2.847
Length = 44665
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 126 ggagagggttgttgtg 141
||||||||||||||||
Sbjct: 39891 ggagagggttgttgtg 39906
>NCR_G_C2.763 Ncr_G_C2.763
Length = 34778
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 249 ctcttttcctttcatc 264
||||||||||||||||
Sbjct: 30213 ctcttttcctttcatc 30198
>NCR_G_C2.577 Ncr_G_C2.577
Length = 63063
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 334 ttgctaataacatggg 349
||||||||||||||||
Sbjct: 27166 ttgctaataacatggg 27151
>NCR_G_C2.569 Ncr_G_C2.569
Length = 192756
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 24 tgtgtacaagggctac 39
||||||||||||||||
Sbjct: 165562 tgtgtacaagggctac 165547
>NCR_G_C2.507 Ncr_G_C2.507
Length = 196904
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 252 ttttcctttcatcgag 267
||||||||||||||||
Sbjct: 33299 ttttcctttcatcgag 33284
>NCR_G_C2.404 Ncr_G_C2.404
Length = 264766
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 aagaaggagggtgaca 163
||||||||||||||||
Sbjct: 29884 aagaaggagggtgaca 29869
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 245 tggcctcttttccttt 260
||||||||||||||||
Sbjct: 24402 tggcctcttttccttt 24387
>NCR_G_C2.283 Ncr_G_C2.283
Length = 3706
Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 333 attgctaataacatgggtat 352
||||||||||| ||||||||
Sbjct: 2392 attgctaataaaatgggtat 2411
>NCR_G_C2.271 Ncr_G_C2.271
Length = 96618
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 168 caaccttgaggttgac 183
||||||||||||||||
Sbjct: 67840 caaccttgaggttgac 67825
>NCR_G_C2.147 Ncr_G_C2.147
Length = 124885
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 gagagggttgttgtgg 142
||||||||||||||||
Sbjct: 60579 gagagggttgttgtgg 60594
>NCR_G_C2.041 Ncr_G_C2.041
Length = 93302
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 268 aagattgttgagagga 283
||||||||||||||||
Sbjct: 34870 aagattgttgagagga 34855
>NCR_G_C2.021 Ncr_G_C2.021
Length = 86769
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 31 aagggctacatcgcca 46
||||||||||||||||
Sbjct: 80580 aagggctacatcgcca 80595
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7150
Number of Sequences: 995
Number of extensions: 7150
Number of successful extensions: 52
Number of sequences better than 10.0: 16
length of query: 357
length of database: 37,969,317
effective HSP length: 16
effective length of query: 341
effective length of database: 37,953,397
effective search space: 12942108377
effective search space used: 12942108377
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)