BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_B02_D0
3ZS5.seq
(91 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.652 Ncr_G_C2.652 32 0.57
NCR_G_C2.596 Ncr_G_C2.596 32 0.57
NCR_G_C2.568 Ncr_G_C2.568 32 0.57
NCR_G_C2.946 Ncr_G_C2.946 30 2.3
NCR_G_C2.230 Ncr_G_C2.230 30 2.3
NCR_G_C2.220 Ncr_G_C2.220 30 2.3
NCR_G_C2.787 Ncr_G_C2.787 28 8.9
NCR_G_C2.731 Ncr_G_C2.731 28 8.9
NCR_G_C2.728 Ncr_G_C2.728 28 8.9
NCR_G_C2.654 Ncr_G_C2.654 28 8.9
NCR_G_C2.632 Ncr_G_C2.632 28 8.9
NCR_G_C2.591 Ncr_G_C2.591 28 8.9
NCR_G_C2.573 Ncr_G_C2.573 28 8.9
NCR_G_C2.521 Ncr_G_C2.521 28 8.9
NCR_G_C2.497 Ncr_G_C2.497 28 8.9
NCR_G_C2.464 Ncr_G_C2.464 28 8.9
NCR_G_C2.441 Ncr_G_C2.441 28 8.9
NCR_G_C2.437 Ncr_G_C2.437 28 8.9
NCR_G_C2.431 Ncr_G_C2.431 28 8.9
NCR_G_C2.396 Ncr_G_C2.396 28 8.9
NCR_G_C2.382 Ncr_G_C2.382 28 8.9
NCR_G_C2.366 Ncr_G_C2.366 28 8.9
NCR_G_C2.315 Ncr_G_C2.315 28 8.9
NCR_G_C2.288 Ncr_G_C2.288 28 8.9
NCR_G_C2.264 Ncr_G_C2.264 28 8.9
NCR_G_C2.215 Ncr_G_C2.215 28 8.9
NCR_G_C2.195 Ncr_G_C2.195 28 8.9
NCR_G_C2.159 Ncr_G_C2.159 28 8.9
NCR_G_C2.128 Ncr_G_C2.128 28 8.9
NCR_G_C2.074 Ncr_G_C2.074 28 8.9
NCR_G_C2.066 Ncr_G_C2.066 28 8.9
NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G... 28 8.9
NCR_G_C2.019 Ncr_G_C2.019 28 8.9
NCR_G_C2.017 Ncr_G_C2.017 28 8.9
>NCR_G_C2.652 Ncr_G_C2.652
Length = 20586
Score = 32.2 bits (16), Expect = 0.57
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 44 gaaatgaaatgatttg 59
||||||||||||||||
Sbjct: 17231 gaaatgaaatgatttg 17246
>NCR_G_C2.596 Ncr_G_C2.596
Length = 84018
Score = 32.2 bits (16), Expect = 0.57
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 24 tcgtcgctggagcgcc 39
||||||||||||||||
Sbjct: 69008 tcgtcgctggagcgcc 69023
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 32.2 bits (16), Expect = 0.57
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 15 atgagcaagtcgtcgc 30
||||||||||||||||
Sbjct: 148185 atgagcaagtcgtcgc 148200
>NCR_G_C2.946 Ncr_G_C2.946
Length = 2410
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 taatatctatttgct 86
|||||||||||||||
Sbjct: 855 taatatctatttgct 869
>NCR_G_C2.230 Ncr_G_C2.230
Length = 223934
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 gcaagtcgtcgctgg 33
|||||||||||||||
Sbjct: 18566 gcaagtcgtcgctgg 18580
>NCR_G_C2.220 Ncr_G_C2.220
Length = 142147
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 gattgaaatgaaatg 54
|||||||||||||||
Sbjct: 125516 gattgaaatgaaatg 125502
>NCR_G_C2.787 Ncr_G_C2.787
Length = 3841
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 tttagtttagtaat 16
||||||||||||||
Sbjct: 2612 tttagtttagtaat 2625
>NCR_G_C2.731 Ncr_G_C2.731
Length = 6066
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gttttagtttagta 14
||||||||||||||
Sbjct: 3158 gttttagtttagta 3145
>NCR_G_C2.728 Ncr_G_C2.728
Length = 37032
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 tttagtttagtaat 16
||||||||||||||
Sbjct: 35870 tttagtttagtaat 35883
>NCR_G_C2.654 Ncr_G_C2.654
Length = 73204
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 tttagtttagtaat 16
||||||||||||||
Sbjct: 194 tttagtttagtaat 181
>NCR_G_C2.632 Ncr_G_C2.632
Length = 14474
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 10817 tgtaatatctattt 10830
>NCR_G_C2.591 Ncr_G_C2.591
Length = 35415
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 756 tgtaatatctattt 743
>NCR_G_C2.573 Ncr_G_C2.573
Length = 3524
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 ttagtttagtaatg 17
||||||||||||||
Sbjct: 69 ttagtttagtaatg 56
>NCR_G_C2.521 Ncr_G_C2.521
Length = 150662
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 1140 tgtaatatctattt 1127
>NCR_G_C2.497 Ncr_G_C2.497
Length = 192966
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 gagcaagtcgtcgc 30
||||||||||||||
Sbjct: 66451 gagcaagtcgtcgc 66464
>NCR_G_C2.464 Ncr_G_C2.464
Length = 7909
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 3339 tgtaatatctattt 3352
>NCR_G_C2.441 Ncr_G_C2.441
Length = 223615
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gcaagtcgtcgctg 32
||||||||||||||
Sbjct: 191658 gcaagtcgtcgctg 191645
>NCR_G_C2.437 Ncr_G_C2.437
Length = 118197
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 tgaaatgaaatgat 56
||||||||||||||
Sbjct: 39933 tgaaatgaaatgat 39920
>NCR_G_C2.431 Ncr_G_C2.431
Length = 19195
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 1849 tgtaatatctattt 1836
>NCR_G_C2.396 Ncr_G_C2.396
Length = 28114
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 749 tgtaatatctattt 736
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 808 tgtaatatctattt 795
>NCR_G_C2.382 Ncr_G_C2.382
Length = 45065
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 ttttagtttagtaa 15
||||||||||||||
Sbjct: 29608 ttttagtttagtaa 29595
>NCR_G_C2.366 Ncr_G_C2.366
Length = 54264
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 aaatgatttgacag 63
||||||||||||||
Sbjct: 2372 aaatgatttgacag 2385
>NCR_G_C2.315 Ncr_G_C2.315
Length = 37190
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 26644 tgtaatatctattt 26657
>NCR_G_C2.288 Ncr_G_C2.288
Length = 8611
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 2104 tgtaatatctattt 2091
>NCR_G_C2.264 Ncr_G_C2.264
Length = 13775
Score = 28.2 bits (14), Expect = 8.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 40 gattgaaatgaaatgatt 57
||||| ||||||||||||
Sbjct: 5843 gattgtaatgaaatgatt 5860
>NCR_G_C2.215 Ncr_G_C2.215
Length = 79770
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 aatctgtaatatct 79
||||||||||||||
Sbjct: 30119 aatctgtaatatct 30132
>NCR_G_C2.195 Ncr_G_C2.195
Length = 69890
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 tcgtcgctggagcg 37
||||||||||||||
Sbjct: 3689 tcgtcgctggagcg 3702
>NCR_G_C2.159 Ncr_G_C2.159
Length = 17017
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 aaatgatttgacag 63
||||||||||||||
Sbjct: 12257 aaatgatttgacag 12244
>NCR_G_C2.128 Ncr_G_C2.128
Length = 227066
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 cgtcgctggagcgc 38
||||||||||||||
Sbjct: 3972 cgtcgctggagcgc 3985
>NCR_G_C2.074 Ncr_G_C2.074
Length = 16651
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 tgtaatatctattt 83
||||||||||||||
Sbjct: 15658 tgtaatatctattt 15671
>NCR_G_C2.066 Ncr_G_C2.066
Length = 117949
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 gattgaaatgaaat 53
||||||||||||||
Sbjct: 63630 gattgaaatgaaat 63617
>NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G_C2.042
from base 1
Length = 110000
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 gagcaagtcgtcgc 30
||||||||||||||
Sbjct: 71034 gagcaagtcgtcgc 71047
>NCR_G_C2.019 Ncr_G_C2.019
Length = 128680
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 gccgattgaaatga 50
||||||||||||||
Sbjct: 74933 gccgattgaaatga 74946
>NCR_G_C2.017 Ncr_G_C2.017
Length = 86020
Score = 28.2 bits (14), Expect = 8.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 atgagcaagtcgtc 28
||||||||||||||
Sbjct: 69401 atgagcaagtcgtc 69414
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1293
Number of Sequences: 995
Number of extensions: 1293
Number of successful extensions: 35
Number of sequences better than 10.0: 34
length of query: 91
length of database: 37,969,317
effective HSP length: 16
effective length of query: 75
effective length of database: 37,953,397
effective search space: 2846504775
effective search space used: 2846504775
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)