TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_B02_D0
3ZS5.seq
(91 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.128 Ncr_G_C2.128 25 2.3
NCR_G_C2.148 Ncr_G_C2.148 25 3.2
NCR_G_C2.411 Ncr_G_C2.411 24 4.3
NCR_G_C2.045 Ncr_G_C2.045 24 4.3
NCR_G_C2.184 Ncr_G_C2.184 24 6.0
NCR_G_C2.373 Ncr_G_C2.373 24 8.2
NCR_G_C2.703 Ncr_G_C2.703 24 8.2
NCR_G_C2.076 Ncr_G_C2.076 24 8.2
NCR_G_C2.080 Ncr_G_C2.080 24 8.2
NCR_G_C2.715 Ncr_G_C2.715 24 8.2
NCR_G_C2.721 Ncr_G_C2.721 24 8.2
NCR_G_C2.160 Ncr_G_C2.160 24 8.2
>NCR_G_C2.128 Ncr_G_C2.128
Length = 227066
Score = 25.3 bits (49), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = -3 / -2
Query: 65 NCQIISFQSALQRRL 21
NC IS SAL+RRL
Sbjct: 159355 NCNFISLGSALERRL 159311
>NCR_G_C2.148 Ncr_G_C2.148
Length = 98105
Score = 24.9 bits (48), Expect = 3.2
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 61 QLICNIYLLY 90
QLICN++LLY
Sbjct: 33540 QLICNVHLLY 33511
>NCR_G_C2.411 Ncr_G_C2.411
Length = 84634
Score = 24.4 bits (47), Expect = 4.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1 / +1
Query: 79 RYYRLTVKSFHFNRRSSD 26
RYY T+ +FN+R SD
Sbjct: 39883 RYYTPTIVELNFNKR*SD 39936
>NCR_G_C2.045 Ncr_G_C2.045
Length = 107702
Score = 24.4 bits (47), Expect = 4.3
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -2 / -2
Query: 63 LSNHFISIGAPATTCS 16
LSNH ISIGA A + S
Sbjct: 106489 LSNHHISIGAVAFSLS 106442
>NCR_G_C2.184 Ncr_G_C2.184
Length = 27440
Score = 24.0 bits (46), Expect = 6.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1 / -1
Query: 82 NRYYRLTVKSFHFNRR 35
NR+Y + + FHF RR
Sbjct: 5876 NRHYTMKILLFHFLRR 5829
>NCR_G_C2.373 Ncr_G_C2.373
Length = 152539
Score = 23.5 bits (45), Expect = 8.2
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -1 / -1
Query: 76 YYRLTVKSFHFNR 38
YY+L +++ H+NR
Sbjct: 146566 YYKLIIRNTHYNR 146528
>NCR_G_C2.703 Ncr_G_C2.703
Length = 22548
Score = 23.5 bits (45), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 68 INCQIISFQSALQRR 24
+NC + SFQ A RR
Sbjct: 4392 VNCPLCSFQFAFDRR 4348
>NCR_G_C2.076 Ncr_G_C2.076
Length = 241344
Score = 23.5 bits (45), Expect = 8.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1 / -3
Query: 58 KSFHFNRRSSDDLLITKLK 2
K F+F DDLL+T ++
Sbjct: 43714 KDFYFEELVGDDLLVTNVE 43658
>NCR_G_C2.080 Ncr_G_C2.080
Length = 6236
Score = 23.5 bits (45), Expect = 8.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2 / -2
Query: 63 LSNHFISIGAPATTC 19
LS HF+ +GA + C
Sbjct: 4108 LSCHFVGLGAGPSVC 4064
>NCR_G_C2.715 Ncr_G_C2.715
Length = 49315
Score = 23.5 bits (45), Expect = 8.2
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -1 / -3
Query: 76 YYRLTVKSFHFNRRSSDDLLI 14
YY L+ SFH SS LL+
Sbjct: 18239 YYLLSFHSFHLTTSSSFPLLL 18177
>NCR_G_C2.721 Ncr_G_C2.721
Length = 23504
Score = 23.5 bits (45), Expect = 8.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2 / +1
Query: 60 SNHFISIGAPATTCSL 13
S+H I AP TCSL
Sbjct: 23350 SHHLIPFYAPKVTCSL 23397
>NCR_G_C2.160 Ncr_G_C2.160
Length = 71170
Score = 23.5 bits (45), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / +3
Query: 69 D*LSNHFISIGAPATTCSLL 10
D*L++ FI IG +TC L
Sbjct: 25953 D*LASRFIYIGFATSTCFFL 26012
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5895976
Number of Sequences: 995
Number of extensions: 22436
Number of successful extensions: 1362
Number of sequences better than 10.0: 12
length of query: 30
length of database: 12,656,439
effective HSP length: 22
effective length of query: 7
effective length of database: 12,634,549
effective search space: 88441843
effective search space used: 88441843
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 45 (23.5 bits)