BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_G04_N0
7ZS5.seq
(331 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.055 Ncr_G_C2.055 36 0.15
NCR_G_C2.669 Ncr_G_C2.669 34 0.61
NCR_G_C2.521 Ncr_G_C2.521 32 2.4
NCR_G_C2.150 Ncr_G_C2.150 32 2.4
NCR_G_C2.126 Ncr_G_C2.126 32 2.4
NCR_G_C2.866 Ncr_G_C2.866 30 9.5
NCR_G_C2.641 Ncr_G_C2.641 30 9.5
NCR_G_C2.615 Ncr_G_C2.615 30 9.5
NCR_G_C2.585 Ncr_G_C2.585 30 9.5
NCR_G_C2.574 Ncr_G_C2.574 30 9.5
NCR_G_C2.552 Ncr_G_C2.552 30 9.5
NCR_G_C2.448 Ncr_G_C2.448 30 9.5
NCR_G_C2.403 Ncr_G_C2.403 30 9.5
NCR_G_C2.346 Ncr_G_C2.346 30 9.5
NCR_G_C2.344 Ncr_G_C2.344 30 9.5
NCR_G_C2.322 Ncr_G_C2.322 30 9.5
NCR_G_C2.311 Ncr_G_C2.311 30 9.5
NCR_G_C2.225 Ncr_G_C2.225 30 9.5
NCR_G_C2.066 Ncr_G_C2.066 30 9.5
NCR_G_C2.045 Ncr_G_C2.045 30 9.5
>NCR_G_C2.055 Ncr_G_C2.055
Length = 79879
Score = 36.2 bits (18), Expect = 0.15
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 140 accttgacatccgattat 157
||||||||||||||||||
Sbjct: 27548 accttgacatccgattat 27531
>NCR_G_C2.669 Ncr_G_C2.669
Length = 2701
Score = 34.2 bits (17), Expect = 0.61
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 155 tatcaagaaagggaatg 171
|||||||||||||||||
Sbjct: 482 tatcaagaaagggaatg 466
>NCR_G_C2.521 Ncr_G_C2.521
Length = 150662
Score = 32.2 bits (16), Expect = 2.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 7 tgtcctcaacttcaataaca 26
||||||||||||||| ||||
Sbjct: 87877 tgtcctcaacttcaagaaca 87896
>NCR_G_C2.150 Ncr_G_C2.150
Length = 137585
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 310 ctgaaggcgacaggtg 325
||||||||||||||||
Sbjct: 8737 ctgaaggcgacaggtg 8722
>NCR_G_C2.126 Ncr_G_C2.126
Length = 65036
Score = 32.2 bits (16), Expect = 2.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 292 cgaactccagggatgcatct 311
|||||| |||||||||||||
Sbjct: 2944 cgaactgcagggatgcatct 2925
>NCR_G_C2.866 Ncr_G_C2.866
Length = 2310
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 cctcaacttcaataa 24
|||||||||||||||
Sbjct: 310 cctcaacttcaataa 324
>NCR_G_C2.641 Ncr_G_C2.641
Length = 27203
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 catggcgctggtcat 237
|||||||||||||||
Sbjct: 19212 catggcgctggtcat 19198
>NCR_G_C2.615 Ncr_G_C2.615
Length = 130067
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 aagcgcatggcgctg 232
|||||||||||||||
Sbjct: 70120 aagcgcatggcgctg 70134
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 aagaaagggaatgcc 173
|||||||||||||||
Sbjct: 209007 aagaaagggaatgcc 208993
>NCR_G_C2.574 Ncr_G_C2.574
Length = 180542
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 47 gacaatatgcttcat 61
|||||||||||||||
Sbjct: 136510 gacaatatgcttcat 136524
>NCR_G_C2.552 Ncr_G_C2.552
Length = 63313
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 tgagaatggtcgctt 121
|||||||||||||||
Sbjct: 12400 tgagaatggtcgctt 12386
>NCR_G_C2.448 Ncr_G_C2.448
Length = 102021
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 gagaacctccaaaag 220
|||||||||||||||
Sbjct: 87660 gagaacctccaaaag 87674
>NCR_G_C2.403 Ncr_G_C2.403
Length = 165442
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 231 tggtcattggtaaca 245
|||||||||||||||
Sbjct: 97015 tggtcattggtaaca 97029
>NCR_G_C2.346 Ncr_G_C2.346
Length = 31295
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 ctccaaaagcgcatg 226
|||||||||||||||
Sbjct: 19321 ctccaaaagcgcatg 19307
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 gcggatcaccttgac 147
|||||||||||||||
Sbjct: 79735 gcggatcaccttgac 79749
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 30.2 bits (15), Expect = 9.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 162 aaagggaatgcctcaagca 180
||||| |||||||||||||
Sbjct: 51511 aaaggcaatgcctcaagca 51529
>NCR_G_C2.311 Ncr_G_C2.311
Length = 51601
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 cctcaacttcaataa 24
|||||||||||||||
Sbjct: 9399 cctcaacttcaataa 9385
>NCR_G_C2.225 Ncr_G_C2.225
Length = 107875
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 ccggagaacctccaa 217
|||||||||||||||
Sbjct: 78686 ccggagaacctccaa 78700
>NCR_G_C2.066 Ncr_G_C2.066
Length = 117949
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 287 ctcttcgaactccag 301
|||||||||||||||
Sbjct: 104245 ctcttcgaactccag 104231
>NCR_G_C2.045 Ncr_G_C2.045
Length = 107702
Score = 30.2 bits (15), Expect = 9.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 accttgacatccgat 154
|||||||||||||||
Sbjct: 48361 accttgacatccgat 48375
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4948
Number of Sequences: 995
Number of extensions: 4948
Number of successful extensions: 20
Number of sequences better than 10.0: 20
length of query: 331
length of database: 37,969,317
effective HSP length: 16
effective length of query: 315
effective length of database: 37,953,397
effective search space: 11955320055
effective search space used: 11955320055
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)