BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_H04_P0
7ZS5.seq
(110 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.475 Ncr_G_C2.475 32 0.72
NCR_G_C2.382 Ncr_G_C2.382 32 0.72
NCR_G_C2.808 Ncr_G_C2.808 30 2.8
NCR_G_C2.639 Ncr_G_C2.639 30 2.8
NCR_G_C2.414 Ncr_G_C2.414 30 2.8
NCR_G_C2.312 Ncr_G_C2.312 30 2.8
NCR_G_C2.220 Ncr_G_C2.220 30 2.8
NCR_G_C2.172 Ncr_G_C2.172 30 2.8
NCR_G_C2.116 Ncr_G_C2.116 30 2.8
NCR_G_C2.037 Ncr_G_C2.037 30 2.8
NCR_G_C2.019 Ncr_G_C2.019 30 2.8
>NCR_G_C2.475 Ncr_G_C2.475
Length = 39686
Score = 32.2 bits (16), Expect = 0.72
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 57 actgcattagctacta 72
||||||||||||||||
Sbjct: 7223 actgcattagctacta 7208
>NCR_G_C2.382 Ncr_G_C2.382
Length = 45065
Score = 32.2 bits (16), Expect = 0.72
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 82 cagaatagttataata 97
||||||||||||||||
Sbjct: 21458 cagaatagttataata 21443
>NCR_G_C2.808 Ncr_G_C2.808
Length = 22721
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 atagttataataccc 100
|||||||||||||||
Sbjct: 14124 atagttataataccc 14138
>NCR_G_C2.639 Ncr_G_C2.639
Length = 36158
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 tagctactaaggtac 78
|||||||||||||||
Sbjct: 541 tagctactaaggtac 527
>NCR_G_C2.414 Ncr_G_C2.414
Length = 42005
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 tacctacagaatagt 90
|||||||||||||||
Sbjct: 32203 tacctacagaatagt 32217
>NCR_G_C2.312 Ncr_G_C2.312
Length = 102336
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 agaatagttataata 97
|||||||||||||||
Sbjct: 51825 agaatagttataata 51811
>NCR_G_C2.220 Ncr_G_C2.220
Length = 142147
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 16 ttgtcgttgtgaaggagat 34
|||||| ||||||||||||
Sbjct: 95828 ttgtcgatgtgaaggagat 95810
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 ggccattgtcgttgt 25
|||||||||||||||
Sbjct: 45329 ggccattgtcgttgt 45315
>NCR_G_C2.172 Ncr_G_C2.172
Length = 97267
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 66 gctactaaggtacctacag 84
|||||| ||||||||||||
Sbjct: 1005 gctactcaggtacctacag 987
>NCR_G_C2.116 Ncr_G_C2.116
Length = 72284
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 taaggtacctacaga 85
|||||||||||||||
Sbjct: 16093 taaggtacctacaga 16079
>NCR_G_C2.037 Ncr_G_C2.037
Length = 55136
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 gagatatcaaattga 44
|||||||||||||||
Sbjct: 48376 gagatatcaaattga 48390
>NCR_G_C2.019 Ncr_G_C2.019
Length = 128680
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 tactaaggtacctac 82
|||||||||||||||
Sbjct: 48299 tactaaggtacctac 48313
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2027
Number of Sequences: 995
Number of extensions: 2027
Number of successful extensions: 12
Number of sequences better than 10.0: 11
length of query: 110
length of database: 37,969,317
effective HSP length: 16
effective length of query: 94
effective length of database: 37,953,397
effective search space: 3567619318
effective search space used: 3567619318
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)