TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_H04_P0
7ZS5.seq
(110 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.089 Ncr_G_C2.089 29 0.25
NCR_G_C2.628 Ncr_G_C2.628 26 1.2
NCR_G_C2.296 Ncr_G_C2.296 25 2.3
NCR_G_C2.320 Ncr_G_C2.320 25 2.3
NCR_G_C2.756 Ncr_G_C2.756 25 3.2
NCR_G_C2.298 Ncr_G_C2.298 25 3.2
NCR_G_C2.085 Ncr_G_C2.085 25 3.2
NCR_G_C2.017 Ncr_G_C2.017 24 4.3
NCR_G_C2.866 Ncr_G_C2.866 24 4.3
NCR_G_C2.430 Ncr_G_C2.430 24 6.0
NCR_G_C2.440 Ncr_G_C2.440 24 6.0
NCR_G_C2.423 Ncr_G_C2.423 24 6.0
NCR_G_C2.022_1 Ncr_G_C2.022_1.seq Continuation (1 of 6) of Ncr_G... 24 6.0
NCR_G_C2.864 Ncr_G_C2.864 24 6.0
NCR_G_C2.707 Ncr_G_C2.707 24 6.0
NCR_G_C2.638 Ncr_G_C2.638 24 6.0
NCR_G_C2.568 Ncr_G_C2.568 24 8.2
NCR_G_C2.256 Ncr_G_C2.256 24 8.2
NCR_G_C2.538 Ncr_G_C2.538 24 8.2
NCR_G_C2.379 Ncr_G_C2.379 24 8.2
NCR_G_C2.734 Ncr_G_C2.734 24 8.2
NCR_G_C2.111 Ncr_G_C2.111 24 8.2
NCR_G_C2.083 Ncr_G_C2.083 24 8.2
NCR_G_C2.764 Ncr_G_C2.764 24 8.2
NCR_G_C2.546 Ncr_G_C2.546 24 8.2
NCR_G_C2.205 Ncr_G_C2.205 24 8.2
>NCR_G_C2.089 Ncr_G_C2.089
Length = 57515
Score = 28.6 bits (56), Expect = 0.25
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2 / -2
Query: 11 GHCRCEGDIKLILRSYCISY*GTY 82
GHC EG+++ ++ + C S *G Y
Sbjct: 51157 GHCDQEGEVRTLV*TVCFSG*GWY 51086
>NCR_G_C2.628 Ncr_G_C2.628
Length = 55709
Score = 26.3 bits (51), Expect = 1.2
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2 / -2
Query: 8 VGHCRCEGDIKLI 46
+G CRC GD++++
Sbjct: 8251 IGMCRCSGDVEIV 8213
>NCR_G_C2.296 Ncr_G_C2.296
Length = 137551
Score = 25.3 bits (49), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = -3 / -1
Query: 51 LSINLISPSQRQWPT 7
L I L SPS+ QWPT
Sbjct: 48289 LIIVLWSPSENQWPT 48245
>NCR_G_C2.320 Ncr_G_C2.320
Length = 80443
Score = 25.3 bits (49), Expect = 2.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 60 Q*LLSINLISPSQRQWPTVT 1
Q L+SIN P Q++WP ++
Sbjct: 6603 QALISINRSFPRQKRWPVLS 6662
>NCR_G_C2.756 Ncr_G_C2.756
Length = 88549
Score = 24.9 bits (48), Expect = 3.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3 / -3
Query: 51 LSINLISPSQRQWPTV 4
LS NL S RQW TV
Sbjct: 81551 LSQNLNSTDTRQWATV 81504
>NCR_G_C2.298 Ncr_G_C2.298
Length = 253576
Score = 24.9 bits (48), Expect = 3.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 8 VGHCRCEGDI 37
VGHCR +GD+
Sbjct: 107650 VGHCRSKGDV 107679
>NCR_G_C2.085 Ncr_G_C2.085
Length = 47946
Score = 24.9 bits (48), Expect = 3.2
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -3 / +2
Query: 45 INLISPSQRQWP 10
I ++ PSQRQWP
Sbjct: 7442 IFILRPSQRQWP 7477
>NCR_G_C2.017 Ncr_G_C2.017
Length = 86020
Score = 24.4 bits (47), Expect = 4.3
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = +2 / -3
Query: 11 GHCRCEGDIKLILRSYCISY*GT 79
GH R G + LIL Y +SY T
Sbjct: 29411 GHTRSLGFLGLILAPYMLSYCAT 29343
>NCR_G_C2.866 Ncr_G_C2.866
Length = 2310
Score = 24.4 bits (47), Expect = 4.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2 / +3
Query: 109 PYFGYYNYSVGTLV 68
P+F YNY VG ++
Sbjct: 2046 PFFTIYNYKVGPII 2087
>NCR_G_C2.430 Ncr_G_C2.430
Length = 226714
Score = 24.0 bits (46), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (57%)
Frame = -2 / -1
Query: 94 YNYSVGTLVANAVTPEYQFDISFT 23
+N ++GT+ N +TP SFT
Sbjct: 22186 HNSTIGTIALNRITPVRALCRSFT 22115
>NCR_G_C2.440 Ncr_G_C2.440
Length = 156136
Score = 24.0 bits (46), Expect = 6.0
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 100 GYYNYSVGTLVA 65
GY++Y++GTL A
Sbjct: 4206 GYFSYTIGTLFA 4241
>NCR_G_C2.423 Ncr_G_C2.423
Length = 97362
Score = 24.0 bits (46), Expect = 6.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / +2
Query: 14 HCRCEGDIKLILRSYCI 64
HCR E D+ + R C+
Sbjct: 1157 HCRMEADLFFLSRVVCV 1207
>NCR_G_C2.022_1 Ncr_G_C2.022_1.seq Continuation (1 of 6) of
Ncr_G_C2.022 from base 1
Length = 110000
Score = 24.0 bits (46), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +2 / -1
Query: 8 VGHCRCEGDIKLILRSYCISY*GTYRIV 91
+G C+ DI+ +RSY S+ RI+
Sbjct: 9749 LGPCKSLSDIRSTIRSYAASHPDVPRIL 9666
>NCR_G_C2.864 Ncr_G_C2.864
Length = 41921
Score = 24.0 bits (46), Expect = 6.0
Identities = 9/26 (34%), Positives = 13/26 (49%)
Frame = -2 / -3
Query: 109 PYFGYYNYSVGTLVANAVTPEYQFDI 32
PY+ Y YS + +TP Q+ I
Sbjct: 564 PYYNSYTYSQNYTLIPILTPNIQYYI 487
>NCR_G_C2.707 Ncr_G_C2.707
Length = 7434
Score = 24.0 bits (46), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2 / -3
Query: 2 VTVGHCRCEGDIKLILRSYCISY 70
V VG C C + +LRS+ +S+
Sbjct: 2242 VQVGSCVCRQCPRCLLRSFTLSF 2174
>NCR_G_C2.638 Ncr_G_C2.638
Length = 6227
Score = 24.0 bits (46), Expect = 6.0
Identities = 8/26 (30%), Positives = 13/26 (49%)
Frame = -2 / -3
Query: 109 PYFGYYNYSVGTLVANAVTPEYQFDI 32
PY+ Y YS + +TP Q+ +
Sbjct: 1512 PYYNSYTYSQNYTLIPILTPNIQYRV 1435
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 23.5 bits (45), Expect = 8.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 14 HCRCEGDIKLIL 49
+CRC GD +LI+
Sbjct: 222248 YCRCPGDNRLIM 222283
>NCR_G_C2.256 Ncr_G_C2.256
Length = 141304
Score = 23.5 bits (45), Expect = 8.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / +1
Query: 23 CEGDIKLILRSYC 61
C GD+KL+ R+ C
Sbjct: 4783 CGGDVKLVNRTLC 4821
>NCR_G_C2.538 Ncr_G_C2.538
Length = 60272
Score = 23.5 bits (45), Expect = 8.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3 / -1
Query: 54 LLSINLISPSQRQWPT 7
L+ + L SPS+RQ+P+
Sbjct: 8243 LIYLTLASPSRRQYPS 8196
>NCR_G_C2.379 Ncr_G_C2.379
Length = 245776
Score = 23.5 bits (45), Expect = 8.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / -3
Query: 2 VTVGHCRCEG 31
VTVG C+C+G
Sbjct: 216425 VTVGMCKCQG 216396
>NCR_G_C2.734 Ncr_G_C2.734
Length = 32712
Score = 23.5 bits (45), Expect = 8.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2 / +2
Query: 20 RCEGDIKLILRSYCIS 67
+ GDI L+ R YCI+
Sbjct: 30845 KVRGDIALLCRFYCIA 30892
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 23.5 bits (45), Expect = 8.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / +2
Query: 29 GDIKLILRSYCIS 67
GDI I+ SYCIS
Sbjct: 89963 GDINEIILSYCIS 90001
>NCR_G_C2.083 Ncr_G_C2.083
Length = 123429
Score = 23.5 bits (45), Expect = 8.2
Identities = 6/14 (42%), Positives = 9/14 (63%)
Frame = -3 / -3
Query: 45 INLISPSQRQWPTV 4
+ + PSQ QWP +
Sbjct: 35485 VRFLKPSQLQWPVI 35444
Score = 23.5 bits (45), Expect = 8.2
Identities = 5/13 (38%), Positives = 12/13 (91%)
Frame = +2 / -1
Query: 23 CEGDIKLILRSYC 61
C+G+++ ++R+YC
Sbjct: 107622 CDGNLEYMMRAYC 107584
>NCR_G_C2.764 Ncr_G_C2.764
Length = 54886
Score = 23.5 bits (45), Expect = 8.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -2 / -2
Query: 109 PYFGYYNYSVGTLVANAVTPEYQFDIS 29
PY+ +Y Y+ +TP Q+ I+
Sbjct: 52398 PYYNFYTYN*NYTPIPILTPNIQYRIA 52318
>NCR_G_C2.546 Ncr_G_C2.546
Length = 112644
Score = 23.5 bits (45), Expect = 8.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -2 / -1
Query: 103 FGYYNYSVGTLVANAVTPEYQFDIS 29
FG+Y++ G V Q+++S
Sbjct: 35205 FGFYSWLEGRGAGEVVMVSLQYEVS 35131
>NCR_G_C2.205 Ncr_G_C2.205
Length = 197179
Score = 23.5 bits (45), Expect = 8.2
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +2 / +3
Query: 14 HCRCEGDIKLILR 52
HCRC + + ILR
Sbjct: 14742 HCRCPANARAILR 14780
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8405740
Number of Sequences: 995
Number of extensions: 47671
Number of successful extensions: 3162
Number of sequences better than 10.0: 26
length of query: 36
length of database: 12,656,439
effective HSP length: 29
effective length of query: 7
effective length of database: 12,627,584
effective search space: 88393088
effective search space used: 88393088
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 45 (23.5 bits)