BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1607_H10_P1
9ZS5.seq
(338 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.111 Ncr_G_C2.111 34 0.62
NCR_G_C2.778 Ncr_G_C2.778 32 2.5
NCR_G_C2.271 Ncr_G_C2.271 32 2.5
NCR_G_C2.227 Ncr_G_C2.227 32 2.5
NCR_G_C2.552 Ncr_G_C2.552 30 9.7
NCR_G_C2.546 Ncr_G_C2.546 30 9.7
NCR_G_C2.519 Ncr_G_C2.519 30 9.7
NCR_G_C2.484 Ncr_G_C2.484 30 9.7
NCR_G_C2.436 Ncr_G_C2.436 30 9.7
NCR_G_C2.404 Ncr_G_C2.404 30 9.7
NCR_G_C2.229 Ncr_G_C2.229 30 9.7
NCR_G_C2.176 Ncr_G_C2.176 30 9.7
NCR_G_C2.138 Ncr_G_C2.138 30 9.7
NCR_G_C2.086 Ncr_G_C2.086 30 9.7
NCR_G_C2.072 Ncr_G_C2.072 30 9.7
NCR_G_C2.007 Ncr_G_C2.007 30 9.7
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 34.2 bits (17), Expect = 0.62
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 105 acaacactcaccaccgc 121
|||||||||||||||||
Sbjct: 143482 acaacactcaccaccgc 143466
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 acatccgtcgattggc 100
||||||||||||||||
Sbjct: 145966 acatccgtcgattggc 145981
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 324 aacaacatcgacttt 338
|||||||||||||||
Sbjct: 10841 aacaacatcgacttt 10855
>NCR_G_C2.778 Ncr_G_C2.778
Length = 22625
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 198 aagaaggaacttgtga 213
||||||||||||||||
Sbjct: 11147 aagaaggaacttgtga 11162
>NCR_G_C2.271 Ncr_G_C2.271
Length = 96618
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 55 tcctgactattcttca 70
||||||||||||||||
Sbjct: 35056 tcctgactattcttca 35071
>NCR_G_C2.227 Ncr_G_C2.227
Length = 73574
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 322 ttaacaacatcgactt 337
||||||||||||||||
Sbjct: 47541 ttaacaacatcgactt 47556
>NCR_G_C2.552 Ncr_G_C2.552
Length = 63313
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 ataccgttgacgacg 255
|||||||||||||||
Sbjct: 34084 ataccgttgacgacg 34098
>NCR_G_C2.546 Ncr_G_C2.546
Length = 112644
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 ccgttgacgacggcc 258
|||||||||||||||
Sbjct: 109168 ccgttgacgacggcc 109182
>NCR_G_C2.519 Ncr_G_C2.519
Length = 168333
Score = 30.2 bits (15), Expect = 9.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 273 agcgcatatgagacgttgt 291
||||||| |||||||||||
Sbjct: 31228 agcgcatctgagacgttgt 31210
>NCR_G_C2.484 Ncr_G_C2.484
Length = 36421
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 tttcgatgctcctga 60
|||||||||||||||
Sbjct: 28742 tttcgatgctcctga 28756
>NCR_G_C2.436 Ncr_G_C2.436
Length = 76402
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 286 cgttgtatgctctca 300
|||||||||||||||
Sbjct: 45366 cgttgtatgctctca 45352
>NCR_G_C2.404 Ncr_G_C2.404
Length = 264766
Score = 30.2 bits (15), Expect = 9.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 292 atgctctcatggagactgc 310
|||| ||||||||||||||
Sbjct: 35009 atgcgctcatggagactgc 35027
>NCR_G_C2.229 Ncr_G_C2.229
Length = 37676
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 320 cattaacaacatcga 334
|||||||||||||||
Sbjct: 13824 cattaacaacatcga 13810
>NCR_G_C2.176 Ncr_G_C2.176
Length = 48427
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 ataccgttgacgacg 255
|||||||||||||||
Sbjct: 16555 ataccgttgacgacg 16569
>NCR_G_C2.138 Ncr_G_C2.138
Length = 46995
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 320 cattaacaacatcga 334
|||||||||||||||
Sbjct: 23076 cattaacaacatcga 23090
>NCR_G_C2.086 Ncr_G_C2.086
Length = 127572
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 caccaccgctgctcg 127
|||||||||||||||
Sbjct: 125115 caccaccgctgctcg 125101
>NCR_G_C2.072 Ncr_G_C2.072
Length = 33319
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 acggcctggaggtcc 267
|||||||||||||||
Sbjct: 15072 acggcctggaggtcc 15086
>NCR_G_C2.007 Ncr_G_C2.007
Length = 114811
Score = 30.2 bits (15), Expect = 9.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 caagaaggaacttgt 211
|||||||||||||||
Sbjct: 96979 caagaaggaacttgt 96993
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5400
Number of Sequences: 995
Number of extensions: 5400
Number of successful extensions: 18
Number of sequences better than 10.0: 16
length of query: 338
length of database: 37,969,317
effective HSP length: 16
effective length of query: 322
effective length of database: 37,953,397
effective search space: 12220993834
effective search space used: 12220993834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)