BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1608_C10_F2
0ZS5.seq
(557 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.203 Ncr_G_C2.203 40 0.017
NCR_G_C2.055 Ncr_G_C2.055 36 0.26
NCR_G_C2.529 Ncr_G_C2.529 34 1.0
NCR_G_C2.344 Ncr_G_C2.344 34 1.0
NCR_G_C2.236 Ncr_G_C2.236 34 1.0
NCR_G_C2.111 Ncr_G_C2.111 34 1.0
NCR_G_C2.848 Ncr_G_C2.848 32 4.1
NCR_G_C2.655 Ncr_G_C2.655 32 4.1
NCR_G_C2.588 Ncr_G_C2.588 32 4.1
NCR_G_C2.585 Ncr_G_C2.585 32 4.1
NCR_G_C2.574 Ncr_G_C2.574 32 4.1
NCR_G_C2.561 Ncr_G_C2.561 32 4.1
NCR_G_C2.502 Ncr_G_C2.502 32 4.1
NCR_G_C2.351 Ncr_G_C2.351 32 4.1
NCR_G_C2.327 Ncr_G_C2.327 32 4.1
NCR_G_C2.298 Ncr_G_C2.298 32 4.1
NCR_G_C2.296 Ncr_G_C2.296 32 4.1
NCR_G_C2.261 Ncr_G_C2.261 32 4.1
NCR_G_C2.214 Ncr_G_C2.214 32 4.1
NCR_G_C2.213 Ncr_G_C2.213 32 4.1
NCR_G_C2.169 Ncr_G_C2.169 32 4.1
NCR_G_C2.164 Ncr_G_C2.164 32 4.1
NCR_G_C2.160 Ncr_G_C2.160 32 4.1
NCR_G_C2.043 Ncr_G_C2.043 32 4.1
NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G... 32 4.1
NCR_G_C2.027 Ncr_G_C2.027 32 4.1
>NCR_G_C2.203 Ncr_G_C2.203
Length = 128723
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 aaggaagaaaagcaaaaggc 83
||||||||||||||||||||
Sbjct: 80410 aaggaagaaaagcaaaaggc 80429
>NCR_G_C2.055 Ncr_G_C2.055
Length = 79879
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12 ggcaaagaaggccgagga 29
||||||||||||||||||
Sbjct: 61101 ggcaaagaaggccgagga 61118
>NCR_G_C2.529 Ncr_G_C2.529
Length = 103305
Score = 34.2 bits (17), Expect = 1.0
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 67 gaagaaaagcaaaaggccagg 87
|||||||||||||||| ||||
Sbjct: 82209 gaagaaaagcaaaagggcagg 82229
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 454 gacgttgcactcgctgg 470
|||||||||||||||||
Sbjct: 47010 gacgttgcactcgctgg 47026
>NCR_G_C2.236 Ncr_G_C2.236
Length = 344103
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19 aaggccgaggaaaaggc 35
|||||||||||||||||
Sbjct: 331242 aaggccgaggaaaaggc 331226
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 62 ctaaggaagaaaagcaa 78
|||||||||||||||||
Sbjct: 107206 ctaaggaagaaaagcaa 107190
>NCR_G_C2.848 Ncr_G_C2.848
Length = 44195
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 440 caacaagcatgcgaga 455
||||||||||||||||
Sbjct: 29988 caacaagcatgcgaga 30003
>NCR_G_C2.655 Ncr_G_C2.655
Length = 36062
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 15 aaagaaggccgaggaa 30
||||||||||||||||
Sbjct: 14375 aaagaaggccgaggaa 14360
>NCR_G_C2.588 Ncr_G_C2.588
Length = 154785
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 401 ctgataccaaccacag 416
||||||||||||||||
Sbjct: 53293 ctgataccaaccacag 53278
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 422 caagtctcgacaaccg 437
||||||||||||||||
Sbjct: 102148 caagtctcgacaaccg 102163
>NCR_G_C2.574 Ncr_G_C2.574
Length = 180542
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 24 cgaggaaaaggctgcc 39
||||||||||||||||
Sbjct: 88086 cgaggaaaaggctgcc 88071
>NCR_G_C2.561 Ncr_G_C2.561
Length = 43969
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 gcaaagaaggccgagg 28
||||||||||||||||
Sbjct: 1361 gcaaagaaggccgagg 1376
>NCR_G_C2.502 Ncr_G_C2.502
Length = 86916
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 340 gaccatgaaagccacg 355
||||||||||||||||
Sbjct: 53621 gaccatgaaagccacg 53636
>NCR_G_C2.351 Ncr_G_C2.351
Length = 5761
Score = 32.2 bits (16), Expect = 4.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 17 agaaggccgaggaaaaggct 36
|||||| |||||||||||||
Sbjct: 2282 agaaggacgaggaaaaggct 2301
>NCR_G_C2.327 Ncr_G_C2.327
Length = 167595
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 232 agcactgagaggggtc 247
||||||||||||||||
Sbjct: 39574 agcactgagaggggtc 39589
>NCR_G_C2.298 Ncr_G_C2.298
Length = 253576
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 241 aggggtcgaagaaagc 256
||||||||||||||||
Sbjct: 228280 aggggtcgaagaaagc 228265
>NCR_G_C2.296 Ncr_G_C2.296
Length = 137551
Score = 32.2 bits (16), Expect = 4.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 340 gaccatgaaagccacggcga 359
|||||||| |||||||||||
Sbjct: 115244 gaccatgacagccacggcga 115263
>NCR_G_C2.261 Ncr_G_C2.261
Length = 69088
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 120 tgacgacggcgaaagc 135
||||||||||||||||
Sbjct: 49805 tgacgacggcgaaagc 49820
>NCR_G_C2.214 Ncr_G_C2.214
Length = 116813
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 505 atgctacatgattcac 520
||||||||||||||||
Sbjct: 39772 atgctacatgattcac 39787
>NCR_G_C2.213 Ncr_G_C2.213
Length = 33903
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 145 gaggatgctgcctcat 160
||||||||||||||||
Sbjct: 29355 gaggatgctgcctcat 29340
>NCR_G_C2.169 Ncr_G_C2.169
Length = 54533
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 169 gtagcggctgcgcccg 184
||||||||||||||||
Sbjct: 27431 gtagcggctgcgcccg 27446
>NCR_G_C2.164 Ncr_G_C2.164
Length = 75564
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 375 cgttggtggtgcagct 390
||||||||||||||||
Sbjct: 71275 cgttggtggtgcagct 71290
>NCR_G_C2.160 Ncr_G_C2.160
Length = 71170
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 agcaaaaggccagggg 89
||||||||||||||||
Sbjct: 30401 agcaaaaggccagggg 30416
>NCR_G_C2.043 Ncr_G_C2.043
Length = 199771
Score = 32.2 bits (16), Expect = 4.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 17 agaaggccgaggaaaaggct 36
|||||||||||||| |||||
Sbjct: 12237 agaaggccgaggaagaggct 12218
>NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G_C2.042
from base 300001
Length = 110000
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 13 gcaaagaaggccgagg 28
||||||||||||||||
Sbjct: 64658 gcaaagaaggccgagg 64643
>NCR_G_C2.027 Ncr_G_C2.027
Length = 84885
Score = 32.2 bits (16), Expect = 4.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 gaagtgaggatgctgc 155
||||||||||||||||
Sbjct: 51876 gaagtgaggatgctgc 51861
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11733
Number of Sequences: 995
Number of extensions: 11733
Number of successful extensions: 26
Number of sequences better than 10.0: 26
length of query: 557
length of database: 37,969,317
effective HSP length: 17
effective length of query: 540
effective length of database: 37,952,402
effective search space: 20494297080
effective search space used: 20494297080
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)