BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1608_F08_L1
6ZS5.seq
(260 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.110 Ncr_G_C2.110 34 0.47
NCR_G_C2.687 Ncr_G_C2.687 32 1.9
NCR_G_C2.546 Ncr_G_C2.546 32 1.9
NCR_G_C2.284 Ncr_G_C2.284 32 1.9
NCR_G_C2.043 Ncr_G_C2.043 32 1.9
NCR_G_C2.676 Ncr_G_C2.676 30 7.4
NCR_G_C2.666 Ncr_G_C2.666 30 7.4
NCR_G_C2.565 Ncr_G_C2.565 30 7.4
NCR_G_C2.507 Ncr_G_C2.507 30 7.4
NCR_G_C2.441 Ncr_G_C2.441 30 7.4
NCR_G_C2.300 Ncr_G_C2.300 30 7.4
NCR_G_C2.223 Ncr_G_C2.223 30 7.4
NCR_G_C2.194 Ncr_G_C2.194 30 7.4
NCR_G_C2.175 Ncr_G_C2.175 30 7.4
NCR_G_C2.111 Ncr_G_C2.111 30 7.4
NCR_G_C2.079 Ncr_G_C2.079 30 7.4
NCR_G_C2.010 Ncr_G_C2.010 30 7.4
>NCR_G_C2.110 Ncr_G_C2.110
Length = 102633
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 85 catcagcacacaactac 101
|||||||||||||||||
Sbjct: 38634 catcagcacacaactac 38650
>NCR_G_C2.687 Ncr_G_C2.687
Length = 148317
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 228 atcagtcaaaatggtt 243
||||||||||||||||
Sbjct: 29563 atcagtcaaaatggtt 29548
>NCR_G_C2.546 Ncr_G_C2.546
Length = 112644
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 87 tcagcacacaactacc 102
||||||||||||||||
Sbjct: 109591 tcagcacacaactacc 109576
>NCR_G_C2.284 Ncr_G_C2.284
Length = 30794
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 137 ccctcaatcgtctaga 152
||||||||||||||||
Sbjct: 24582 ccctcaatcgtctaga 24567
>NCR_G_C2.043 Ncr_G_C2.043
Length = 199771
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 gaaccgcactctgaac 166
||||||||||||||||
Sbjct: 125664 gaaccgcactctgaac 125679
>NCR_G_C2.676 Ncr_G_C2.676
Length = 48155
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 aatttgttccctcaa 143
|||||||||||||||
Sbjct: 15953 aatttgttccctcaa 15939
>NCR_G_C2.666 Ncr_G_C2.666
Length = 46519
Score = 30.2 bits (15), Expect = 7.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 178 cagtgcatgcacggaagaa 196
|||| ||||||||||||||
Sbjct: 10477 cagttcatgcacggaagaa 10495
>NCR_G_C2.565 Ncr_G_C2.565
Length = 82225
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 gggttggggttcggg 71
|||||||||||||||
Sbjct: 42136 gggttggggttcggg 42122
>NCR_G_C2.507 Ncr_G_C2.507
Length = 196904
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 ggaggatcgagtttg 217
|||||||||||||||
Sbjct: 45327 ggaggatcgagtttg 45313
>NCR_G_C2.441 Ncr_G_C2.441
Length = 223615
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 gttggggttcgggat 73
|||||||||||||||
Sbjct: 125125 gttggggttcgggat 125111
>NCR_G_C2.300 Ncr_G_C2.300
Length = 27689
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 tacctttacaataat 131
|||||||||||||||
Sbjct: 8635 tacctttacaataat 8649
>NCR_G_C2.223 Ncr_G_C2.223
Length = 42533
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 gtatatcgggctgca 29
|||||||||||||||
Sbjct: 4869 gtatatcgggctgca 4883
>NCR_G_C2.194 Ncr_G_C2.194
Length = 74501
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 agtgcatgcacggaa 193
|||||||||||||||
Sbjct: 12590 agtgcatgcacggaa 12604
>NCR_G_C2.175 Ncr_G_C2.175
Length = 57986
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatggt 242
|||||||||||||||
Sbjct: 40190 atcagtcaaaatggt 40204
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 aaatggttaaagcaa 250
|||||||||||||||
Sbjct: 62323 aaatggttaaagcaa 62309
>NCR_G_C2.079 Ncr_G_C2.079
Length = 20437
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gtctagaaccgcact 160
|||||||||||||||
Sbjct: 2505 gtctagaaccgcact 2519
>NCR_G_C2.010 Ncr_G_C2.010
Length = 27287
Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 ggtacctgcagtgca 184
|||||||||||||||
Sbjct: 9254 ggtacctgcagtgca 9268
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3628
Number of Sequences: 995
Number of extensions: 3628
Number of successful extensions: 17
Number of sequences better than 10.0: 17
length of query: 260
length of database: 37,969,317
effective HSP length: 16
effective length of query: 244
effective length of database: 37,953,397
effective search space: 9260628868
effective search space used: 9260628868
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)