BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1609_C10_E1
9ZT.seq
(440 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.448 Ncr_G_C2.448 60 1e-08
NCR_G_C2.382 Ncr_G_C2.382 34 0.82
NCR_G_C2.309 Ncr_G_C2.309 34 0.82
NCR_G_C2.224 Ncr_G_C2.224 34 0.82
NCR_G_C2.745 Ncr_G_C2.745 32 3.2
NCR_G_C2.723 Ncr_G_C2.723 32 3.2
NCR_G_C2.539 Ncr_G_C2.539 32 3.2
NCR_G_C2.322 Ncr_G_C2.322 32 3.2
NCR_G_C2.308 Ncr_G_C2.308 32 3.2
>NCR_G_C2.448 Ncr_G_C2.448
Length = 102021
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 187 caatgcaaaatcaagaaccaccatcccgaatggtccaa 224
|||||||| ||||||||||||||||||||||||||||
Sbjct: 89492 caatgcaagctcaagaaccaccatcccgaatggtccaa 89529
>NCR_G_C2.382 Ncr_G_C2.382
Length = 45065
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 312 cgctctcgcggcacaac 328
|||||||||||||||||
Sbjct: 1909 cgctctcgcggcacaac 1925
>NCR_G_C2.309 Ncr_G_C2.309
Length = 70740
Score = 34.2 bits (17), Expect = 0.82
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 406 gcggatcaagctgctggagca 426
|||| ||||||||||||||||
Sbjct: 29714 gcgggtcaagctgctggagca 29694
>NCR_G_C2.224 Ncr_G_C2.224
Length = 69257
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 124 gagaggcagttcaagtt 140
|||||||||||||||||
Sbjct: 69064 gagaggcagttcaagtt 69048
>NCR_G_C2.745 Ncr_G_C2.745
Length = 36727
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 191 gcaaaatcaagaacca 206
||||||||||||||||
Sbjct: 1387 gcaaaatcaagaacca 1372
>NCR_G_C2.723 Ncr_G_C2.723
Length = 12969
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 285 agacattgccatggct 300
||||||||||||||||
Sbjct: 1351 agacattgccatggct 1336
>NCR_G_C2.539 Ncr_G_C2.539
Length = 95985
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 134 tcaagttcaagacttt 149
||||||||||||||||
Sbjct: 52365 tcaagttcaagacttt 52380
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 270 tggtctctctgacaaa 285
||||||||||||||||
Sbjct: 10896 tggtctctctgacaaa 10911
>NCR_G_C2.308 Ncr_G_C2.308
Length = 22688
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 327 actaggcgagctacct 342
||||||||||||||||
Sbjct: 7182 actaggcgagctacct 7197
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7735
Number of Sequences: 995
Number of extensions: 7735
Number of successful extensions: 9
Number of sequences better than 10.0: 9
length of query: 440
length of database: 37,969,317
effective HSP length: 17
effective length of query: 423
effective length of database: 37,952,402
effective search space: 16053866046
effective search space used: 16053866046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)